Jin Won Song

2024

Etiological agent and clinical characteristics of haemorrhagic fever with renal syndrome in the southern Republic of Korea: a genomic surveillance study

Prayitno, S. P., Natasha, A., Lee, S., Kim, C. M., Lee, Y. M., Park, K., Kim, J., Kim, S. G., Park, J., Rajoriya, S., Palacios, G., Oh, Y., Song, J. W., Kim, D. M. & Kim, W. K., 2024 Jun, In: Clinical Microbiology and Infection. 30, 6, p. 795-802 8 p.

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Open Access

Exploring the Genetic Diversity and Molecular Evolution of Seoul and Hantaan Orthohantaviruses

Demirev, A. V., Lee, S., Park, S., Kim, H., Cho, S., Lee, K., Kim, K., Song, J. W., Park, M. S. & Kim, J. I., 2024 Jan, In: Viruses. 16, 1, 105.

Research output: Contribution to journal › Article › peer-review

Open Access

First detection and characterization of hepatitis E virus (Rocahepevirus ratti) from urban Norway rats (Rattus norvegicus) in the Republic of Korea

Park, K., Kim, J., Noh, J., Kim, K., Yang, E., Kim, S. G., Cho, H. K., Byun, K. S., Kim, J. H., Lee, Y. S., Shim, J. O., Shin, M., Kim, W. K. & Song, J. W., 2024 Jan, In: Journal of Medical Virology. 96, 1, e29401.

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Open Access

1 Citation (Scopus)

High-resolution phylogeographical surveillance of Hantaan orthohantavirus using rapid amplicon-based Flongle sequencing, Republic of Korea

Kim, J., Park, K., Kim, K., Noh, J., Kim, S. G., Yang, E., Cho, H. K., Lee, S. H., No, J. S., Lee, G. Y., Lee, D., Song, D. H., Gu, S. H., Park, M. S., Cho, N. H., Jeong, S. T., Kim, W. K. & Song, J. W., 2024 Jan, In: Journal of Medical Virology. 96, 1, e29346.

Research output: Contribution to journal › Article › peer-review

2023

A Development of Rapid Whole-Genome Sequencing of Seoul orthohantavirus Using a Portable One-Step Amplicon-Based High Accuracy Nanopore System

Park, K., Noh, J., Kim, K., Kim, J., Cho, H. K., Kim, S. G., Yang, E., Kim, W. K. & Song, J. W., 2023 Jul, In: Viruses. 15, 7, 1542.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Citation (Scopus)

Annual (2023) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota)

Kuhn, J. H., Abe, J., Adkins, S., Alkhovsky, S. V., Avšič-Županc, T., Ayllón, M. A., Bahl, J., Balkema-Buschmann, A., Ballinger, M. J., Baranwal, V. K., Beer, M., Bejerman, N., Bergeron, É., Biedenkopf, N., Blair, C. D., Blasdell, K. R., Blouin, A. G., Bradfute, S. B., Briese, T. & Brown, P. A. & 167 others, Buchholz, U. J., Buchmeier, M. J., Bukreyev, A., Burt, F., Büttner, C., Calisher, C. H., Cao, M., Casas, I., Chandran, K., Charrel, R. N., Chaturvedi, K. K., Chooi, K. M., Crane, A., Bó, E. D., de la Torre, J. C., de Souza, W. M., de Swart, R. L., Debat, H., Dheilly, N. M., Di Paola, N., Di Serio, F., Dietzgen, R. G., Digiaro, M., Drexler, J. F., Duprex, W. P., Dürrwald, R., Easton, A. J., Elbeaino, T., Ergünay, K., Feng, G., Firth, A. E., Fooks, A. R., Formenty, P. B. H., Freitas-Astúa, J., Gago-Zachert, S., García, M. L., García-Sastre, A., Garrison, A. R., Gaskin, T. R., Gong, W., Gonzalez, J. P. J., de Bellocq, J. G., Griffiths, A., Groschup, M. H., Günther, I., Günther, S., Hammond, J., Hasegawa, Y., Hayashi, K., Hepojoki, J., Higgins, C. M., Hongō, S., Horie, M., Hughes, H. R., Hume, A. J., Hyndman, T. H., Ikeda, K., Jiāng, D., Jonson, G. B., Junglen, S., Klempa, B., Klingström, J., Kondō, H., Koonin, E. V., Krupovic, M., Kubota, K., Kurath, G., Laenen, L., Lambert, A. J., Lǐ, J., Li, J. M., Liu, R., Lukashevich, I. S., MacDiarmid, R. M., Maes, P., Marklewitz, M., Marshall, S. H., Marzano, S. Y. L., McCauley, J. W., Mirazimi, A., Mühlberger, E., Nabeshima, T., Naidu, R., Natsuaki, T., Navarro, B., Navarro, J. A., Neriya, Y., Netesov, S. V., Neumann, G., Nowotny, N., Nunes, M. R. T., Ochoa-Corona, F. M., Okada, T., Palacios, G., Pallás, V., Papa, A., Paraskevopoulou, S., Parrish, C. R., Pauvolid-Corrêa, A., Pawęska, J. T., Pérez, D. R., Pfaff, F., Plemper, R. K., Postler, T. S., Rabbidge, L. O., Radoshitzky, S. R., Ramos-González, P. L., Rehanek, M., Resende, R. O., Reyes, C. A., Rodrigues, T. C. S., Romanowski, V., Rubbenstroth, D., Rubino, L., Runstadler, J. A., Sabanadzovic, S., Sadiq, S., Salvato, M. S., Sasaya, T., Schwemmle, M., Sharpe, S. R., Shi, M., Shimomoto, Y., Sidharthan, V. K., Sironi, M., Smither, S., Song, J. W., Spann, K. M., Spengler, J. R., Stenglein, M. D., Takada, A., Takeyama, S., Tatara, A., Tesh, R. B., Thornburg, N. J., Tian, X., Tischler, N. D., Tomitaka, Y., Tomonaga, K., Tordo, N., Tu, C., Turina, M., Tzanetakis, I. E., Vaira, A. M., van den Hoogen, B., Vanmechelen, B., Vasilakis, N., Verbeek, M., von Bargen, S., Wada, J., Wahl, V., Walker, P. J., Waltzek, T. B., Whitfield, A. E., Wolf, Y. I., Xia, H., Xylogianni, E., Yanagisawa, H., Yano, K., Ye, G., Yuan, Z., Zerbini, F. M., Zhang, G., Zhang, S., Zhang, Y. Z., Zhao, L. & Økland, A. L., 2023, In: Journal of General Virology. 104, 8

Research output: Contribution to journal › Article › peer-review

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21 Citations (Scopus)

ICTV Virus Taxonomy Profile: Phenuiviridae 2023

Sasaya, T., Palacios, G., Briese, T., Serio, F. D., Groschup, M. H., Neriya, Y., Song, J. W. & Tomitaka, Y., 2023, In: Journal of General Virology. 104, 9, 104:001893.

Research output: Contribution to journal › Article › peer-review

Open Access

12 Citations (Scopus)

Molecular diagnosis of patients with hepatitis A virus infection using amplicon-based nanopore sequencing

Lee, G. Y., Park, K., Lee, Y. S., Kim, J. H., Byun, K. S., Kim, J., Kim, W. K. & Song, J. W., 2023 Jul, In: PloS one. 18, 7 JULY, e0288361.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Citations (Scopus)

VirPipe: an easy-to-use and customizable pipeline for detecting viral genomes from Nanopore sequencing

Kim, K., Park, K., Lee, S., Baek, S. H., Lim, T. H., Kim, J., Manavalan, B., Song, J. W. & Kim, W. K., 2023 May, In: Bioinformatics. 39, 5, btad293.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Citations (Scopus)

2022

2022 taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Kuhn, J. H., Adkins, S., Alkhovsky, S. V., Avšič-Županc, T., Ayllón, M. A., Bahl, J., Balkema-Buschmann, A., Ballinger, M. J., Bandte, M., Beer, M., Bejerman, N., Bergeron, É., Biedenkopf, N., Bigarré, L., Blair, C. D., Blasdell, K. R., Bradfute, S. B., Briese, T., Brown, P. A. & Bruggmann, R. & 161 others, Buchholz, U. J., Buchmeier, M. J., Bukreyev, A., Burt, F., Büttner, C., Calisher, C. H., Candresse, T., Carson, J., Casas, I., Chandran, K., Charrel, R. N., Chiaki, Y., Crane, A., Crane, M., Dacheux, L., Bó, E. D., de la Torre, J. C., de Lamballerie, X., de Souza, W. M., de Swart, R. L., Dheilly, N. M., Di Paola, N., Di Serio, F., Dietzgen, R. G., Digiaro, M., Drexler, J. F., Duprex, W. P., Dürrwald, R., Easton, A. J., Elbeaino, T., Ergünay, K., Feng, G., Feuvrier, C., Firth, A. E., Fooks, A. R., Formenty, P. B. H., Freitas-Astúa, J., Gago-Zachert, S., García, M. L., García-Sastre, A., Garrison, A. R., Godwin, S. E., Gonzalez, J. P. J., de Bellocq, J. G., Griffiths, A., Groschup, M. H., Günther, S., Hammond, J., Hepojoki, J., Hierweger, M. M., Hongō, S., Horie, M., Horikawa, H., Hughes, H. R., Hume, A. J., Hyndman, T. H., Jiāng, D., Jonson, G. B., Junglen, S., Kadono, F., Karlin, D. G., Klempa, B., Klingström, J., Koch, M. C., Kondō, H., Koonin, E. V., Krásová, J., Krupovic, M., Kubota, K., Kuzmin, I. V., Laenen, L., Lambert, A. J., Lǐ, J., Li, J. M., Lieffrig, F., Lukashevich, I. S., Luo, D., Maes, P., Marklewitz, M., Marshall, S. H., Marzano, S. Y. L., McCauley, J. W., Mirazimi, A., Mohr, P. G., Moody, N. J. G., Morita, Y., Morrison, R. N., Mühlberger, E., Naidu, R., Natsuaki, T., Navarro, J. A., Neriya, Y., Netesov, S. V., Neumann, G., Nowotny, N., Ochoa-Corona, F. M., Palacios, G., Pallandre, L., Pallás, V., Papa, A., Paraskevopoulou, S., Parrish, C. R., Pauvolid-Corrêa, A., Pawęska, J. T., Pérez, D. R., Pfaff, F., Plemper, R. K., Postler, T. S., Pozet, F., Radoshitzky, S. R., Ramos-González, P. L., Rehanek, M., Resende, R. O., Reyes, C. A., Romanowski, V., Rubbenstroth, D., Rubino, L., Rumbou, A., Runstadler, J. A., Rupp, M., Sabanadzovic, S., Sasaya, T., Schmidt-Posthaus, H., Schwemmle, M., Seuberlich, T., Sharpe, S. R., Shi, M., Sironi, M., Smither, S., Song, J. W., Spann, K. M., Spengler, J. R., Stenglein, M. D., Takada, A., Tesh, R. B., Těšíková, J., Thornburg, N. J., Tischler, N. D., Tomitaka, Y., Tomonaga, K., Tordo, N., Tsunekawa, K., Turina, M., Tzanetakis, I. E., Vaira, A. M., van den Hoogen, B., Vanmechelen, B., Vasilakis, N., Verbeek, M., von Bargen, S., Wada, J., Wahl, V., Walker, P. J., Whitfield, A. E., Williams, J. V., Wolf, Y. I., Yamasaki, J., Yanagisawa, H., Ye, G., Zhang, Y. Z. & Økland, A. L., 2022 Dec, In: Archives of virology. 167, 12, p. 2857-2906 50 p.

Research output: Contribution to journal › Article › peer-review

Open Access

43 Citations (Scopus)

A Portable Diagnostic Assay, Genetic Diversity, and Isolation of Seoul Virus from Rattus norvegicus Collected in Gangwon Province, Republic of Korea

Park, K., Lee, S. H., Kim, J., Lee, J., Lee, G. Y., Cho, S., Noh, J., Choi, J., Park, J., Song, D. H., Gu, S. H., Yun, H., Kim, J. E., Lee, D., Hwang, I. U., Kim, W. K. & Song, J. W., 2022 Sept, In: Pathogens. 11, 9, 1047.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Citations (Scopus)

Clinical and Immunological Predictors of Hemorrhagic Fever with Renal Syndrome Outcome during the Early Phase

Lee, G. Y., Kim, W. K., No, J. S., Yi, Y., Park, H. C., Jung, J., Cho, S., Lee, J., Lee, S. H., Park, K., Kim, J. & Song, J. W., 2022 Mar, In: Viruses. 14, 3, 595.

Research output: Contribution to journal › Article › peer-review

Open Access

4 Citations (Scopus)

Genotyping and Molecular Diagnosis of Hepatitis A Virus in Human Clinical Samples Using Multiplex PCR-Based Next-Generation Sequencing

Lee, G. Y., Kim, W. K., Cho, S., Park, K., Kim, J., Lee, S. H., Lee, J., Lee, Y. S., Kim, J. H., Byun, K. S. & Song, J. W., 2022 Jan, In: Microorganisms. 10, 1, 100.

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Open Access

5 Citations (Scopus)

Surveillance and Molecular Identification of Borrelia Species in Ticks Collected at U.S. Army Garrison Humphreys, Republic of Korea, 2018-2019

Lee, S. H., Chong, S. T., Kim, H. C., Klein, T. A., Park, K., Lee, J., Kim, J. A., Kim, W. K. & Song, J. W., 2022 Jan 1, In: Journal of Medical Entomology. 59, 1, p. 363-371 9 p.

Research output: Contribution to journal › Article › peer-review

4 Citations (Scopus)

Whole-genome sequencing and genetic diversity of severe fever with thrombocytopenia syndrome virus using multiplex PCR-based nanopore sequencing, Republic of Korea

Lee, J., Park, K., Kim, J., Lee, S. H., Lee, G. Y., Cho, S., Kim, H. C., Klein, T. A., Kim, J. A., Choi, J., Park, J., Song, D. H., Gu, S. H., Yun, H., Kim, J. E., Lee, D., Hur, G. H., Jeong, S. T., Hwang, I. U. & Kim, W. K. & 1 others, Song, J. W., 2022, In: PLoS Neglected Tropical Diseases. 16, 9, e0010763.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Citations (Scopus)

2021

2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Kuhn, J. H., Adkins, S., Agwanda, B. R., Al Kubrusli, R., Alkhovsky, S. V., Amarasinghe, G. K., Avšič-Županc, T., Ayllón, M. A., Bahl, J., Balkema-Buschmann, A., Ballinger, M. J., Basler, C. F., Bavari, S., Beer, M., Bejerman, N., Bennett, A. J., Bente, D. A., Bergeron, É., Bird, B. H. & Blair, C. D. & 231 others, Blasdell, K. R., Blystad, D. R., Bojko, J., Borth, W. B., Bradfute, S., Breyta, R., Briese, T., Brown, P. A., Brown, J. K., Buchholz, U. J., Buchmeier, M. J., Bukreyev, A., Burt, F., Büttner, C., Calisher, C. H., Cao, M., Casas, I., Chandran, K., Charrel, R. N., Cheng, Q., Chiaki, Y., Chiapello, M., Choi, I. R., Ciuffo, M., Clegg, J. C. S., Crozier, I., Dal Bó, E., de la Torre, J. C., de Lamballerie, X., de Swart, R. L., Debat, H., Dheilly, N. M., Di Cicco, E., Di Paola, N., Di Serio, F., Dietzgen, R. G., Digiaro, M., Dolnik, O., Drebot, M. A., Drexler, J. F., Dundon, W. G., Duprex, W. P., Dürrwald, R., Dye, J. M., Easton, A. J., Ebihara, H., Elbeaino, T., Ergünay, K., Ferguson, H. W., Fooks, A. R., Forgia, M., Formenty, P. B. H., Fránová, J., Freitas-Astúa, J., Fu, J., Fürl, S., Gago-Zachert, S., Gāo, G. F., García, M. L., García-Sastre, A., Garrison, A. R., Gaskin, T., Gonzalez, J. P. J., Griffiths, A., Goldberg, T. L., Groschup, M. H., Günther, S., Hall, R. A., Hammond, J., Han, T., Hepojoki, J., Hewson, R., Hong, J., Hong, N., Hongo, S., Horie, M., Hu, J. S., Hu, T., Hughes, H. R., Hüttner, F., Hyndman, T. H., Ilyas, M., Jalkanen, R., Jiāng, D., Jonson, G. B., Junglen, S., Kadono, F., Kaukinen, K. H., Kawate, M., Klempa, B., Klingström, J., Kobinger, G., Koloniuk, I., Kondō, H., Koonin, E. V., Krupovic, M., Kubota, K., Kurath, G., Laenen, L., Lambert, A. J., Langevin, S. L., Lee, B., Lefkowitz, E. J., Leroy, E. M., Li, S., Li, L., Lǐ, J., Liu, H., Lukashevich, I. S., Maes, P., de Souza, W. M., Marklewitz, M., Marshall, S. H., Marzano, S. Y. L., Massart, S., McCauley, J. W., Melzer, M., Mielke-Ehret, N., Miller, K. M., Ming, T. J., Mirazimi, A., Mordecai, G. J., Mühlbach, H. P., Mühlberger, E., Naidu, R., Natsuaki, T., Navarro, J. A., Netesov, S. V., Neumann, G., Nowotny, N., Nunes, M. R. T., Olmedo-Velarde, A., Palacios, G., Pallás, V., Pályi, B., Papa, A., Paraskevopoulou, S., Park, A. C., Parrish, C. R., Patterson, D. A., Pauvolid-Corrêa, A., Pawęska, J. T., Payne, S., Peracchio, C., Pérez, D. R., Postler, T. S., Qi, L., Radoshitzky, S. R., Resende, R. O., Reyes, C. A., Rima, B. K., Luna, G. R., Romanowski, V., Rota, P., Rubbenstroth, D., Rubino, L., Runstadler, J. A., Sabanadzovic, S., Sall, A. A., Salvato, M. S., Sang, R., Sasaya, T., Schulze, A. D., Schwemmle, M., Shi, M., Shí, X., Shí, Z., Shimomoto, Y., Shirako, Y., Siddell, S. G., Simmonds, P., Sironi, M., Smagghe, G., Smither, S., Song, J. W., Spann, K., Spengler, J. R., Stenglein, M. D., Stone, D. M., Sugano, J., Suttle, C. A., Tabata, A., Takada, A., Takeuchi, S., Tchouassi, D. P., Teffer, A., Tesh, R. B., Thornburg, N. J., Tomitaka, Y., Tomonaga, K., Tordo, N., Torto, B., Towner, J. S., Tsuda, S., Tu, C., Turina, M., Tzanetakis, I. E., Uchida, J., Usugi, T., Vaira, A. M., Vallino, M., van den Hoogen, B., Varsani, A., Vasilakis, N., Verbeek, M., von Bargen, S., Wada, J., Wahl, V., Walker, P. J., Wang, L. F., Wang, G., Wang, Y., Wang, Y., Waqas, M., Wèi, T., Wen, S., Whitfield, A. E., Williams, J. V., Wolf, Y. I., Wu, J., Xu, L., Yanagisawa, H., Yang, C., Yang, Z., Zerbini, F. M., Zhai, L., Zhang, Y. Z., Zhang, S., Zhang, J., Zhang, Z. & Zhou, X., 2021 Dec, In: Archives of virology. 166, 12, p. 3513-3566 54 p.

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63 Citations (Scopus)

A clinical case of scrub typhus in the united states forces korea patient with eschar and genetic identification of orientia tsutsugamushi using multiplex pcr-based next-generation sequencing

Cho, S., Allison, J. C., Park, K., No, J. S., Lee, S. H., Park, K., Kim, J., Klein, T. A., Kim, H. C., Kim, W. K. & Song, J. W., 2021 Apr, In: Pathogens. 10, 4, 424.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Citations (Scopus)

A novel genotype of hantaan orthohantavirus harbored by apodemus agrarius chejuensis as a potential etiologic agent of hemorrhagic fever with renal syndrome in Republic of Korea

Park, K., Kim, W. K., Lee, S. H., Kim, J., Lee, J., Cho, S., Lee, G. Y., Noid, J. S., Lee, K. H. & Song, J. W., 2021 May, In: PLoS Neglected Tropical Diseases. 15, 5, e0009400.

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Open Access

8 Citations (Scopus)

Association between haemorrhagic fever with renal syndrome and cancers

Yi, Y. J., Kang, M., Kim, W. K., Huh, K., Klingström, J., Song, J. W. & Jung, J., 2021 Dec, In: International Journal of Infectious Diseases. 113, p. 127-135 9 p.

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3 Citations (Scopus)

Broad-spectrum antiviral activity of 3d8, a nucleic acid-hydrolyzing single-chain variable fragment (Scfv), targeting sars-cov-2 and multiple coronaviruses in vitro

Lee, G., Budhathoki, S., Lee, G. Y., Oh, K. J., Ham, Y. K., Kim, Y. J., Lim, Y. R., Hoang, P. T., Lee, Y., Lim, S. W., Kim, J. M., Cho, S., Kim, T. H., Song, J. W., Lee, S. & Kim, W. K., 2021 Apr, In: Viruses. 13, 4, 650.

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9 Citations (Scopus)

Discovery and genetic characterization of novel paramyxoviruses related to the genus henipavirus in crocidura species in the republic of Korea

Lee, S. H., Kim, K., Kim, J., No, J. S., Park, K., Budhathoki, S., Lee, S. H., Lee, J., Cho, S. H., Cho, S., Lee, G. Y., Hwang, J., Kim, H. C., Klein, T. A., Uhm, C. S., Kim, W. K. & Song, J. W., 2021 Oct, In: Viruses. 13, 10, 2020.

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Open Access

28 Citations (Scopus)

Geographic distribution and modeling of ticks in the Republic of Korea and the application of tick models towards understanding the distribution of associated pathogenic agents

St. John, H. K., Masuoka, P., Jiang, J., Takhampunya, R., Klein, T. A., Kim, H. C., Chong, S. T., Song, J. W., Kim, Y. J., Farris, C. M. & Richards, A. L., 2021 Jul, In: Ticks and Tick-borne Diseases. 12, 4, 101686.

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Open Access

8 Citations (Scopus)

Human infection with seoul orthohantavirus in Korea, 2019

Kang, C., Kim, J. I., Lee, J., Bae, S., Kim, M. J., Song, K.-J., Song, J. W., Kim, S. H. & Park, M. S., 2021 Feb, In: PLoS Neglected Tropical Diseases. 15, 2, p. 1-8 8 p., e0009168.

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3 Citations (Scopus)

Multiplex pcr-based nanopore sequencing and epidemiological surveillance of hantaan orthohantavirus in apodemus agrarius, republic of korea

Park, K., Lee, S. H., Kim, J., Lee, J., Lee, G. Y., Cho, S., Lee, S. H., Park, K., No, J. S., Budhathoki, S., Kim, Y. J., Kim, Y. S., Kim, H. C., Klein, T. A., Kim, W. K. & Song, J. W., 2021 May, In: Viruses. 13, 5, 847.

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Open Access

8 Citations (Scopus)

Novel Paju Apodemus paramyxovirus 1 and 2, harbored by Apodemus agrarius in the Republic of Korea

Lee, S. H., No, J. S., Kim, K., Budhathoki, S., Park, K., Lee, G. Y., Cho, S., Kim, B. H., Cho, S., Kim, J., Lee, J., Cho, S. H., Kim, H. C., Klein, T. A., Uhm, C. S., Kim, W. K. & Song, J. W., 2021 Oct, In: Virology. 562, p. 40-49 10 p.

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11 Citations (Scopus)

Urinary genome detection and tracking of hantaan virus from hemorrhagic fever with renal syndrome patients using multiplex PCR-based next-generation sequencing

Cho, S., Kim, W. K., No, J. S., Lee, S. H., Jung, J., Yi, Y., Park, H. C., Lee, G. Y., Park, K., Kim, J. A., Kim, J., Lee, J., Lee, D., Song, D. H., Gu, S. H., Jeong, S. T. & Song, J. W., 2021 Sept, In: PLoS Neglected Tropical Diseases. 15, 9, e0009707.

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7 Citations (Scopus)

2020

2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Kuhn, J. H., Adkins, S., Alioto, D., Alkhovsky, S. V., Amarasinghe, G. K., Anthony, S. J., Avšič-Županc, T., Ayllón, M. A., Bahl, J., Balkema-Buschmann, A., Ballinger, M. J., Bartonička, T., Basler, C., Bavari, S., Beer, M., Bente, D. A., Bergeron, É., Bird, B. H., Blair, C. & Blasdell, K. R. & 209 others, Bradfute, S. B., Breyta, R., Briese, T., Brown, P. A., Buchholz, U. J., Buchmeier, M. J., Bukreyev, A., Burt, F., Buzkan, N., Calisher, C. H., Cao, M., Casas, I., Chamberlain, J., Chandran, K., Charrel, R. N., Chen, B., Chiumenti, M., Choi, I. R., Clegg, J. C. S., Crozier, I., da Graça, J. V., Dal Bó, E., Dávila, A. M. R., de la Torre, J. C., de Lamballerie, X., de Swart, R. L., Di Bello, P. L., Di Paola, N., Di Serio, F., Dietzgen, R. G., Digiaro, M., Dolja, V. V., Dolnik, O., Drebot, M. A., Drexler, J. F., Dürrwald, R., Dufkova, L., Dundon, W. G., Duprex, W. P., Dye, J. M., Easton, A. J., Ebihara, H., Elbeaino, T., Ergünay, K., Fernandes, J., Fooks, A. R., Formenty, P. B. H., Forth, L. F., Fouchier, R. A. M., Freitas-Astúa, J., Gago-Zachert, S., Gāo, G. F., García, M. L., García-Sastre, A., Garrison, A. R., Gbakima, A., Goldstein, T., Gonzalez, J. P. J., Griffiths, A., Groschup, M. H., Günther, S., Guterres, A., Hall, R. A., Hammond, J., Hassan, M., Hepojoki, J., Hepojoki, S., Hetzel, U., Hewson, R., Hoffmann, B., Hongo, S., Höper, D., Horie, M., Hughes, H. R., Hyndman, T. H., Jambai, A., Jardim, R., Jiāng, D., Jin, Q., Jonson, G. B., Junglen, S., Karadağ, S., Keller, K. E., Klempa, B., Klingström, J., Kobinger, G., Kondō, H., Koonin, E. V., Krupovic, M., Kurath, G., Kuzmin, I. V., Laenen, L., Lamb, R. A., Lambert, A. J., Langevin, S. L., Lee, B., Lemos, E. R. S., Leroy, E. M., Li, D., Lǐ, J., Liang, M., Liú, W., Liú, Y., Lukashevich, I. S., Maes, P., Marciel de Souza, W., Marklewitz, M., Marshall, S. H., Martelli, G. P., Martin, R. R., Marzano, S. Y. L., Massart, S., McCauley, J. W., Mielke-Ehret, N., Minafra, A., Minutolo, M., Mirazimi, A., Mühlbach, H. P., Mühlberger, E., Naidu, R., Natsuaki, T., Navarro, B., Navarro, J. A., Netesov, S. V., Neumann, G., Nowotny, N., Nunes, M. R. T., Nylund, A., Økland, A. L., Oliveira, R. C., Palacios, G., Pallas, V., Pályi, B., Papa, A., Parrish, C. R., Pauvolid-Corrêa, A., Pawęska, J. T., Payne, S., Pérez, D. R., Pfaff, F., Radoshitzky, S. R., Rahman, A. U., Ramos-González, P. L., Resende, R. O., Reyes, C. A., Rima, B. K., Romanowski, V., Robles Luna, G., Rota, P., Rubbenstroth, D., Runstadler, J. A., Ruzek, D., Sabanadzovic, S., Salát, J., Sall, A. A., Salvato, M. S., Sarpkaya, K., Sasaya, T., Schwemmle, M., Shabbir, M. Z., Shí, X., Shí, Z., Shirako, Y., Simmonds, P., Širmarová, J., Sironi, M., Smither, S., Smura, T., Song, J. W., Spann, K. M., Spengler, J. R., Stenglein, M. D., Stone, D. M., Straková, P., Takada, A., Tesh, R. B., Thornburg, N. J., Tomonaga, K., Tordo, N., Towner, J. S., Turina, M., Tzanetakis, I., Ulrich, R. G., Vaira, A. M., van den Hoogen, B., Varsani, A., Vasilakis, N., Verbeek, M., Wahl, V., Walker, P. J., Wang, H., Wang, J., Wang, X., Wang, L. F., Wèi, T., Wells, H., Whitfield, A. E., Williams, J. V., Wolf, Y. I., Wú, Z., Yang, X., Yáng, X., Yu, X., Yutin, N., Zerbini, F. M., Zhang, T., Zhang, Y. Z., Zhou, G. & Zhou, X., 2020 Dec 1, In: Archives of virology. 165, 12, p. 3023-3072 50 p.

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163 Citations (Scopus)

Active targeted surveillance to identify sites of emergence of hantavirus

Kim, W. K., No, J. S., Lee, D., Jung, J., Park, H., Yi, Y., Kim, J. A., Lee, S. H., Kim, Y., Park, S., Cho, S., Lee, G. Y., Song, D. H., Gu, S. H., Park, K., Kim, H. C., Wiley, M. R., Chain, P. S. G., Jeong, S. T. & Klein, T. A. & 2 others, Palacios, G. & Song, J. W., 2020 Feb 1, In: Clinical Infectious Diseases. 70, 3, p. 464-473 10 p.

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Open Access

18 Citations (Scopus)

Genetic diversity and phylogeography of Jeju Orthohantavirus (Hantaviridae) in the Republic of Korea

Lee, S. H., Kim, W. K., Park, K., No, J. S., Lee, G. Y., Kim, H. C., Klein, T. A., Min, M. S., Lee, S. J., Hwang, J., Park, M. S. & Song, J. W., 2020 Apr, In: Virology. 543, p. 13-19 7 p.

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1 Citation (Scopus)

Molecular epidemiology and genetic diversity of orthohantaviruses in small mammals in Western Poland

Lee, S. H., No, J. S., Kim, W. K., Gajda, E., Perec-Matysiak, A., Kim, J. A., Hildebrand, J., Yanagihara, R. & Song, J. W., 2020 Jul, In: American Journal of Tropical Medicine and Hygiene. 103, 1, p. 193-199 7 p.

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7 Citations (Scopus)

Phylogeographic diversity and hybrid zone of hantaan orthohantavirus collected in Gangwon Province, Republic of Korea

Lee, G. Y., Kim, W. K., Park, K., Lee, S. H., Hwang, J., No, J. S., Cho, S., Lee, D., Song, D. H., Gu, S. H., Park, M. S., Jeong, S. T., Kim, Y. S. & Song, J. W., 2020 Oct, In: PLoS Neglected Tropical Diseases. 14, 10, p. 1-18 18 p., e0008714.

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9 Citations (Scopus)

2019

Comparison of targeted next-generation sequencing for whole-genome sequencing of Hantaan orthohantavirus in Apodemus agrarius lung tissues

No, J. S., Kim, W. K., Cho, S., Lee, S. H., Kim, J. A., Lee, D., Song, D. H., Gu, S. H., Jeong, S. T., Wiley, M. R., Palacios, G. & Song, J. W., 2019 Dec 1, In: Scientific reports. 9, 1, 16631.

Research output: Contribution to journal › Article › peer-review

Open Access

24 Citations (Scopus)

Hemorrhagic fever with renal syndrome

Noh, J. Y., Jung, J. & Song, J. W., 2019 Dec 1, In: Infection and Chemotherapy. 51, 4, p. 405-413 9 p.

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15 Citations (Scopus)

Our hantaan virus became a new family, Hantaviridae in the classification of order Bunyavirales. It will remain as a history of virology

Lee, H. W. & Song, J. W., 2019 Jun, In: Journal of Bacteriology and Virology. 49, 2, p. 45-52 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Taxonomy of the order Bunyavirales: update 2019

Abudurexiti, A., Adkins, S., Alioto, D., Alkhovsky, S. V., Avšič-Županc, T., Ballinger, M. J., Bente, D. A., Beer, M., Bergeron, É., Blair, C. D., Briese, T., Buchmeier, M. J., Burt, F. J., Calisher, C. H., Cháng, C., Charrel, R. N., Choi, I. R., Clegg, J. C. S., de la Torre, J. C. & de Lamballerie, X. & 83 others, Dèng, F., Di Serio, F., Digiaro, M., Drebot, M. A., Duàn, X., Ebihara, H., Elbeaino, T., Ergünay, K., Fulhorst, C. F., Garrison, A. R., Gāo, G. F., Gonzalez, J. P. J., Groschup, M. H., Günther, S., Haenni, A. L., Hall, R. A., Hepojoki, J., Hewson, R., Hú, Z., Hughes, H. R., Jonson, M. G., Junglen, S., Klempa, B., Klingström, J., Kòu, C., Laenen, L., Lambert, A. J., Langevin, S. A., Liu, D., Lukashevich, I. S., Luò, T., Lǚ, C., Maes, P., de Souza, W. M., Marklewitz, M., Martelli, G. P., Matsuno, K., Mielke-Ehret, N., Minutolo, M., Mirazimi, A., Moming, A., Mühlbach, H. P., Naidu, R., Navarro, B., Nunes, M. R. T., Palacios, G., Papa, A., Pauvolid-Corrêa, A., Pawęska, J. T., Qiáo, J., Radoshitzky, S. R., Resende, R. O., Romanowski, V., Sall, A. A., Salvato, M. S., Sasaya, T., Shěn, S., Shí, X., Shirako, Y., Simmonds, P., Sironi, M., Song, J. W., Spengler, J. R., Stenglein, M. D., Sū, Z., Sūn, S., Táng, S., Turina, M., Wáng, B., Wáng, C., Wáng, H., Wáng, J., Wèi, T., Whitfield, A. E., Zerbini, F. M., Zhāng, J., Zhāng, L., Zhāng, Y., Zhang, Y. Z., Zhāng, Y., Zhou, X., Zhū, L. & Kuhn, J. H., 2019 Jul 1, In: Archives of virology. 164, 7, p. 1949-1965 17 p.

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266 Citations (Scopus)

Taxonomy of the order Bunyavirales: second update 2018

Maes, P., Adkins, S., Alkhovsky, S. V., Avšič-Županc, T., Ballinger, M. J., Bente, D. A., Beer, M., Bergeron, É., Blair, C. D., Briese, T., Buchmeier, M. J., Burt, F. J., Calisher, C. H., Charrel, R. N., Choi, I. R., Clegg, J. C. S., de la Torre, J. C., de Lamballerie, X., DeRisi, J. L. & Digiaro, M. & 58 others, Drebot, M., Ebihara, H., Elbeaino, T., Ergünay, K., Fulhorst, C. F., Garrison, A. R., Gāo, G. F., Gonzalez, J. P. J., Groschup, M. H., Günther, S., Haenni, A. L., Hall, R. A., Hewson, R., Hughes, H. R., Jain, R. K., Jonson, M. G., Junglen, S., Klempa, B., Klingström, J., Kormelink, R., Lambert, A. J., Langevin, S. A., Lukashevich, I. S., Marklewitz, M., Martelli, G. P., Mielke-Ehret, N., Mirazimi, A., Mühlbach, H. P., Naidu, R., Nunes, M. R. T., Palacios, G., Papa, A., Pawęska, J. T., Peters, C. J., Plyusnin, A., Radoshitzky, S. R., Resende, R. O., Romanowski, V., Sall, A. A., Salvato, M. S., Sasaya, T., Schmaljohn, C., Shí, X., Shirako, Y., Simmonds, P., Sironi, M., Song, J. W., Spengler, J. R., Stenglein, M. D., Tesh, R. B., Turina, M., Wèi, T., Whitfield, A. E., Yeh, S. D., Zerbini, F. M., Zhang, Y. Z., Zhou, X. & Kuhn, J. H., 2019 Mar 1, In: Archives of virology. 164, 3, p. 927-941 15 p.

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104 Citations (Scopus)

2018

Multiplex PCR−based next-generation sequencing and global diversity of seoul virus in humans and rats

Kim, W. K., No, J. S., Lee, S. H., Song, D. H., Lee, D., Kim, J. A., Gu, S. H., Park, S., Jeong, S. T., Kim, H. C., Klein, T. A., Wiley, M. R., Palacios, G. & Song, J. W., 2018 Feb, In: Emerging Infectious Diseases. 24, 2, p. 249-257 9 p.

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Open Access

29 Citations (Scopus)

Protective effectiveness of inactivated hantavirus vaccine against hemorrhagic fever with renal syndrome

Jung, J., Ko, S. J., Oh, H. S., Moon, S. M., Song, J. W. & Huh, K., 2018 May 1, In: Journal of Infectious Diseases. 217, 9, p. 1417-1420 4 p.

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Open Access

26 Citations (Scopus)

Urban rodent surveillance, climatic association, and genomic characterization of Seoul virus collected at U.S. army garrison, Seoul, Republic of Korea, 2006-2010

Kim, H. C., Kim, W. K., No, J. S., Lee, S. H., Gu, S. H., Chong, S. T., Klein, T. A. & Song, J. W., 2018, In: American Journal of Tropical Medicine and Hygiene. 99, 2, p. 470-476 7 p.

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5 Citations (Scopus)

2017

Adaptive mutations of neuraminidase stalk truncation and deglycosylation confer enhanced pathogenicity of influenza A viruses

Park, S., Il Kim, J., Lee, I., Bae, J. Y., Yoo, K., Nam, M., Kim, J., Sook Park, M., Song, K. J., Song, J. W., Kee, S. H. & Park, M. S., 2017 Dec 1, In: Scientific reports. 7, 1, 10928.

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Open Access

31 Citations (Scopus)

Dynamic circulation and genetic exchange of a shrew-borne hantavirus, imjin virus, in the Republic of Korea

Lee, S. H., Kim, W. K., No, J. S., Kim, J. A., Kim, J. I., Gu, S. H., Kim, H. C., Klein, T. A., Park, M. S. & Song, J. W., 2017 Mar 15, In: Scientific reports. 7, 44369.

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Open Access

19 Citations (Scopus)

Hantavirus surveillance and genetic diversity targeting small mammals at Camp Humphreys, a US military installation and new expansion site, Republic of Korea

Kim, H. C., Kim, W. K., Klein, T. A., Chong, S. T., Nunn, P. V., Kim, J. A., Lee, S. H., No, J. S. & Song, J. W., 2017 Apr, In: PloS one. 12, 4, e0176514.

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Open Access

8 Citations (Scopus)

Phylogenetic relationships of the HA and NA genes between vaccine and seasonal influenza A(H3N2) strains in Korea

Kim, J. I., Lee, I., Park, S., Bae, J. Y., Yoo, K., Cheong, H.-J., Noh, J. Y., Hong, K. W., Lemey, P., Vrancken, B., Kim, J., Nam, M., Yun, S. H., Cho, W. I., Song, J. Y., Kim, W. J., Park, M. S., Song, J. W., Kee, S.-H. & Song, K.-J. & 1 others, Park, M. S., 2017 Mar, In: PloS one. 12, 3, e0172059.

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13 Citations (Scopus)

Sequence-Independent, Single-Primer amplification next-generation sequencing of hantaan virus cell culture-based isolates

Song, D. H., Kim, W. K., Gu, S. H., Lee, D., Kim, J. A., No, J. S., Lee, S. H., Wiley, M. R., Palacios, G., Song, J. W. & Jeong, S. T., 2017, In: American Journal of Tropical Medicine and Hygiene. 96, 2, p. 389-394 6 p.

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14 Citations (Scopus)

2016

Genetic and molecular epidemiological characterization of a novel adenovirus in antarctic penguins collected between 2008 and 2013

Lee, S. Y., Kim, J. H., Seo, T. K., No, J. S., Kim, H., Kim, W., Choi, H. G., Kang, S. H. & Song, J. W., 2016 Jun, In: PloS one. 11, 6, e0157032.

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Open Access

20 Citations (Scopus)

Genetic Diversity and Reassortment of Hantaan Virus Tripartite RNA Genomes in Nature, the Republic of Korea

Kim, J. A., Kim, W. K., No, J. S., Lee, S. H., Lee, S. Y., Kim, J. H., Kho, J. H., Lee, D., Song, D. H., Gu, S. H., Jeong, S. T., Park, M. S., Kim, H. C., Klein, T. A. & Song, J. W., 2016 Jun 17, In: PLoS Neglected Tropical Diseases. 10, 6, e0004650.

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Open Access

29 Citations (Scopus)

Phylogeographic analysis of hemorrhagic fever with renal syndrome patients using multiplex PCR-based next generation sequencing

Kim, W. K., Kim, J. A., Song, D. H., Lee, D., Kim, Y. C., Lee, S. Y., Lee, S. H., No, J. S., Kim, J. H., Kho, J. H., Gu, S. H., Jeong, S. T., Wiley, M., Kim, H. C., Klein, T. A., Palacios, G. & Song, J. W., 2016 May 25, In: Scientific reports. 6, 1, 26017.

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Open Access

30 Citations (Scopus)

Prevalence, Isolation and Molecular Characterization of Bartonella Species in Republic of Korea

Ko, S., Kang, J. G., Kim, H. C., Klein, T. A., Choi, K. S., Song, J. W., Youn, H. Y. & Chae, J. S., 2016 Feb 1, In: Transboundary and Emerging Diseases. 63, 1, p. 56-67 12 p.

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12 Citations (Scopus)

Reassortment compatibility between PB1, PB2, and HA genes of the two influenza B virus lineages in mammalian cells

Kim, J. I., Lee, I., Park, S., Bae, J. Y., Yoo, K., Lemey, P., Park, M. S., Song, J. W., Kee, S.-H., Song, K.-J. & Park, M. S., 2016 Jun 8, In: Scientific reports. 6, 27480.

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Open Access

10 Citations (Scopus)

The recent ancestry of Middle East respiratory syndrome coronavirus in Korea has been shaped by recombination

Kim, J. I., Kim, Y. J., Lemey, P., Lee, I., Park, S., Bae, J. Y., Kim, D., Kim, H., Jang, S. I., Yang, J. S., Kim, H., Kim, D. W., Nam, J. G., Kim, S. S., Kim, K., Myun Lee, J., Song, M. K., Song, D., Chang, J. & Hong, K. J. & 4 others, Bae, Y. S., Song, J. W., Lee, J. S. & Park, M. S., 2016 Jan 6, In: Scientific reports. 6, 18825.

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Open Access

21 Citations (Scopus)

Jin Won Song

Research output

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