TY - JOUR
T1 - Amide I vibrational dynamics of N-methylacetamide in polar solvents
T2 - The role of electrostatic interactions
AU - DeCamp, M. F.
AU - DeFlores, L.
AU - McCracken, J. M.
AU - Tokmakoff, A.
AU - Kwac, K.
AU - Cho, M.
N1 - Copyright:
Copyright 2012 Elsevier B.V., All rights reserved.
PY - 2005/6/2
Y1 - 2005/6/2
N2 - The vibrational frequency of the amide I transition of peptides is known to be sensitive to the strength of its hydrogen bonding interactions. In an effort to account for interactions with hydrogen bonding solvents in terms of electrostatics, we study the vibrational dynamics of the amide I coordinate of N-methylacetamide in prototypical polar solvents: D 2O, CDCl 3, and DMSO-d 6. These three solvents have varying hydrogen bonding strengths, and provide three distinct solvent environments for the amide group. The frequency-frequency correlation function, the orientational correlation function, and the vibrational relaxation rate of the amide I vibration in each solvent are retrieved by using three-pulse vibrational photon echoes, two-dimensional infrared spectroscopy, and pump-probe spectroscopy. Direct comparisons are made to molecular dynamics simulations. We find good quantitative agreement between the experimentally retrieved and simulated correlation functions over all time scales when the solute-solvent interactions are determined from the electrostatic potential between the solvent and the atomic sites of the amide group.
AB - The vibrational frequency of the amide I transition of peptides is known to be sensitive to the strength of its hydrogen bonding interactions. In an effort to account for interactions with hydrogen bonding solvents in terms of electrostatics, we study the vibrational dynamics of the amide I coordinate of N-methylacetamide in prototypical polar solvents: D 2O, CDCl 3, and DMSO-d 6. These three solvents have varying hydrogen bonding strengths, and provide three distinct solvent environments for the amide group. The frequency-frequency correlation function, the orientational correlation function, and the vibrational relaxation rate of the amide I vibration in each solvent are retrieved by using three-pulse vibrational photon echoes, two-dimensional infrared spectroscopy, and pump-probe spectroscopy. Direct comparisons are made to molecular dynamics simulations. We find good quantitative agreement between the experimentally retrieved and simulated correlation functions over all time scales when the solute-solvent interactions are determined from the electrostatic potential between the solvent and the atomic sites of the amide group.
UR - http://www.scopus.com/inward/record.url?scp=20544452788&partnerID=8YFLogxK
U2 - 10.1021/jp050257p
DO - 10.1021/jp050257p
M3 - Article
C2 - 16852342
AN - SCOPUS:20544452788
SN - 1520-6106
VL - 109
SP - 11016
EP - 11026
JO - Journal of Physical Chemistry B
JF - Journal of Physical Chemistry B
IS - 21
ER -