Analysis of Brain fMRI Data via Topological Data Clustering Method IoPS

Taekgeun Jung; Hong Seo Ryoo

doi:10.1109/BIBM52615.2021.9669771

Analysis of Brain fMRI Data via Topological Data Clustering Method IoPS

Taekgeun Jung, Hong Seo Ryoo

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Citation (Scopus)

Abstract

Topological Data Analysis is a machine learning technique that has lately gained traction in bioinformatics research. With mathematical clarity and efficiency, our clustering algorithm IoPS topologically constructs clusters from data. We uses IoPS to analyze CMP (Continuous Multitask Paradigm) data which is the fMRI of 18 people's brain while they performed some tasks. The brain ROIs that are commonly or distinctly activated for various tasks are clearly identified using our method.

Original language	English
Title of host publication	Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021
Editors	Yufei Huang, Lukasz Kurgan, Feng Luo, Xiaohua Tony Hu, Yidong Chen, Edward Dougherty, Andrzej Kloczkowski, Yaohang Li
Publisher	Institute of Electrical and Electronics Engineers Inc.
Pages	1655-1657
Number of pages	3
ISBN (Electronic)	9781665401265
DOIs	https://doi.org/10.1109/BIBM52615.2021.9669771
Publication status	Published - 2021
Event	2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021 - Virtual, Online, United States Duration: 2021 Dec 9 → 2021 Dec 12

Publication series

Name	Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021

Conference

Conference	2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021
Country/Territory	United States
City	Virtual, Online
Period	21/12/9 → 21/12/12

Bibliographical note

Funding Information:
ACKNOWLEDGMENT Data used in the preparation of this work were obtained from the NIMH’s Lab of Brain and Cognition (LBC; Principal Investigators: Javier Gonzalez-Castillo, Peter A. Bandettini). LBC funding was provided by the National Institute of Mental Health, Division of Intramural Research Programs (NIMH DIRP).

Publisher Copyright:
© 2021 IEEE.

Keywords

Biomedical Image Analysis
Brain fMRI
Interval of Persistent Structure
Topological Data Analysis

ASJC Scopus subject areas

Artificial Intelligence
Computer Science Applications
Biomedical Engineering
Health Informatics
Information Systems and Management

Access to Document

10.1109/BIBM52615.2021.9669771

Cite this

Jung, T., & Ryoo, H. S. (2021). Analysis of Brain fMRI Data via Topological Data Clustering Method IoPS. In Y. Huang, L. Kurgan, F. Luo, X. T. Hu, Y. Chen, E. Dougherty, A. Kloczkowski, & Y. Li (Eds.), Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021 (pp. 1655-1657). (Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/BIBM52615.2021.9669771

Analysis of Brain fMRI Data via Topological Data Clustering Method IoPS. / Jung, Taekgeun; Ryoo, Hong Seo.
Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021. ed. / Yufei Huang; Lukasz Kurgan; Feng Luo; Xiaohua Tony Hu; Yidong Chen; Edward Dougherty; Andrzej Kloczkowski; Yaohang Li. Institute of Electrical and Electronics Engineers Inc., 2021. p. 1655-1657 (Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Jung, T & Ryoo, HS 2021, Analysis of Brain fMRI Data via Topological Data Clustering Method IoPS. in Y Huang, L Kurgan, F Luo, XT Hu, Y Chen, E Dougherty, A Kloczkowski & Y Li (eds), Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021. Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021, Institute of Electrical and Electronics Engineers Inc., pp. 1655-1657, 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021, Virtual, Online, United States, 21/12/9. https://doi.org/10.1109/BIBM52615.2021.9669771

Jung T, Ryoo HS. Analysis of Brain fMRI Data via Topological Data Clustering Method IoPS. In Huang Y, Kurgan L, Luo F, Hu XT, Chen Y, Dougherty E, Kloczkowski A, Li Y, editors, Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021. Institute of Electrical and Electronics Engineers Inc. 2021. p. 1655-1657. (Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021). doi: 10.1109/BIBM52615.2021.9669771

Jung, Taekgeun ; Ryoo, Hong Seo. / Analysis of Brain fMRI Data via Topological Data Clustering Method IoPS. Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021. editor / Yufei Huang ; Lukasz Kurgan ; Feng Luo ; Xiaohua Tony Hu ; Yidong Chen ; Edward Dougherty ; Andrzej Kloczkowski ; Yaohang Li. Institute of Electrical and Electronics Engineers Inc., 2021. pp. 1655-1657 (Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021).

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abstract = "Topological Data Analysis is a machine learning technique that has lately gained traction in bioinformatics research. With mathematical clarity and efficiency, our clustering algorithm IoPS topologically constructs clusters from data. We uses IoPS to analyze CMP (Continuous Multitask Paradigm) data which is the fMRI of 18 people's brain while they performed some tasks. The brain ROIs that are commonly or distinctly activated for various tasks are clearly identified using our method. ",

keywords = "Biomedical Image Analysis, Brain fMRI, Interval of Persistent Structure, Topological Data Analysis",

author = "Taekgeun Jung and Ryoo, {Hong Seo}",

note = "Funding Information: ACKNOWLEDGMENT Data used in the preparation of this work were obtained from the NIMH{\textquoteright}s Lab of Brain and Cognition (LBC; Principal Investigators: Javier Gonzalez-Castillo, Peter A. Bandettini). LBC funding was provided by the National Institute of Mental Health, Division of Intramural Research Programs (NIMH DIRP). Publisher Copyright: {\textcopyright} 2021 IEEE.; 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021 ; Conference date: 09-12-2021 Through 12-12-2021",

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Analysis of Brain fMRI Data via Topological Data Clustering Method IoPS

Abstract

Publication series

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Bibliographical note

Keywords

ASJC Scopus subject areas

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