TY - GEN
T1 - Co-synthesis of Histopathology Nuclei Image-Label Pairs Using a Context-Conditioned Joint Diffusion Model
AU - Min, Seonghui
AU - Oh, Hyun Jic
AU - Jeong, Won Ki
PY - 2025
Y1 - 2025
N2 - . In multi-class histopathology nuclei analysis tasks, the lack of training data becomes a main bottleneck for the performance of learning-based methods. To tackle this challenge, previous methods have utilized generative models to increase data by generating synthetic samples. However, existing methods often overlook the importance of considering the context of biological tissues (e.g., shape, spatial layout, and tissue type) Moreover, while generative models have shown superior performance in synthesizing realistic histopathology images, none of the existing methods are capable of producing image-label pairs at the same time. In this paper, we introduce a novel framework for co-synthesizing histopathology nuclei images and paired semantic labels using a context-conditioned joint diffusion model. We propose conditioning of a diffusion model using nucleus centroid layouts with structure-related text prompts to incorporate spatial and structural context information into the generation targets. Moreover, we enhance the granularity of our synthesized semantic labels by generating instance-wise nuclei labels using distance maps synthesized concurrently in conjunction with the images and semantic labels. We demonstrate the effectiveness of our framework in generating high-quality samples on multi-institutional, multi-organ, and multi-modality datasets. Our synthetic data consistently outperforms existing augmentation methods in the downstream tasks of nuclei segmentation and classification.
AB - . In multi-class histopathology nuclei analysis tasks, the lack of training data becomes a main bottleneck for the performance of learning-based methods. To tackle this challenge, previous methods have utilized generative models to increase data by generating synthetic samples. However, existing methods often overlook the importance of considering the context of biological tissues (e.g., shape, spatial layout, and tissue type) Moreover, while generative models have shown superior performance in synthesizing realistic histopathology images, none of the existing methods are capable of producing image-label pairs at the same time. In this paper, we introduce a novel framework for co-synthesizing histopathology nuclei images and paired semantic labels using a context-conditioned joint diffusion model. We propose conditioning of a diffusion model using nucleus centroid layouts with structure-related text prompts to incorporate spatial and structural context information into the generation targets. Moreover, we enhance the granularity of our synthesized semantic labels by generating instance-wise nuclei labels using distance maps synthesized concurrently in conjunction with the images and semantic labels. We demonstrate the effectiveness of our framework in generating high-quality samples on multi-institutional, multi-organ, and multi-modality datasets. Our synthetic data consistently outperforms existing augmentation methods in the downstream tasks of nuclei segmentation and classification.
KW - Data augmentation
KW - Histopathology nuclei segmentation
KW - Joint diffusion model
UR - https://www.scopus.com/pages/publications/105010211483
U2 - 10.1007/978-3-031-72624-8_9
DO - 10.1007/978-3-031-72624-8_9
M3 - Conference contribution
AN - SCOPUS:105010211483
SN - 9783031726231
T3 - Lecture Notes in Computer Science
SP - 146
EP - 162
BT - Computer Vision - ECCV 2024 - 18th European Conference, Proceedings
A2 - Leonardis, Aleš
A2 - Ricci, Elisa
A2 - Roth, Stefan
A2 - Russakovsky, Olga
A2 - Sattler, Torsten
A2 - Varol, Gül
PB - Springer Science and Business Media Deutschland GmbH
T2 - 18th European Conference on Computer Vision, ECCV 2024
Y2 - 29 September 2024 through 4 October 2024
ER -