Codon and amino-acid distribution in DNA

J. K. Kim; S. I. Yang; Y. H. Kwon; E. I. Lee

doi:10.1016/j.chaos.2004.07.027

Codon and amino-acid distribution in DNA

J. K. Kim, S. I. Yang, Y. H. Kwon^*, E. I. Lee

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

13 Citations (Scopus)

Abstract

According to the Zipf's law, the distribution of rank-ordered frequency of words in the natural language can be modelled on the power law. In this paper, we examine the frequency distribution of 64 codons over the coding and non-coding regions of 88 DNA from EMBL and GenBank database, using exponential fitting. Also, we regard 20 amino-acids as vocabulary, perform the same frequency analysis to the same database and show that amino-acids can be used as biological meaningful words for Zipf's approach. Our analysis suggests that a natural language structure may exist not only in the coding region of DNA but in the non-coding one of DNA.

Original language	English
Pages (from-to)	1795-1807
Number of pages	13
Journal	Chaos, Solitons and Fractals
Volume	23
Issue number	5
DOIs	https://doi.org/10.1016/j.chaos.2004.07.027
Publication status	Published - 2005 Mar

Bibliographical note

Funding Information:
This paper is supported by KOSEF and Hanyang University.

ASJC Scopus subject areas

Statistical and Nonlinear Physics
Mathematical Physics
General Physics and Astronomy
Applied Mathematics

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10.1016/j.chaos.2004.07.027

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title = "Codon and amino-acid distribution in DNA",

abstract = "According to the Zipf's law, the distribution of rank-ordered frequency of words in the natural language can be modelled on the power law. In this paper, we examine the frequency distribution of 64 codons over the coding and non-coding regions of 88 DNA from EMBL and GenBank database, using exponential fitting. Also, we regard 20 amino-acids as vocabulary, perform the same frequency analysis to the same database and show that amino-acids can be used as biological meaningful words for Zipf's approach. Our analysis suggests that a natural language structure may exist not only in the coding region of DNA but in the non-coding one of DNA.",

author = "Kim, \{J. K.\} and Yang, \{S. I.\} and Kwon, \{Y. H.\} and Lee, \{E. I.\}",

note = "Funding Information: This paper is supported by KOSEF and Hanyang University.",

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doi = "10.1016/j.chaos.2004.07.027",

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AU - Kim, J. K.

AU - Yang, S. I.

AU - Kwon, Y. H.

AU - Lee, E. I.

N1 - Funding Information: This paper is supported by KOSEF and Hanyang University.

PY - 2005/3

Y1 - 2005/3

N2 - According to the Zipf's law, the distribution of rank-ordered frequency of words in the natural language can be modelled on the power law. In this paper, we examine the frequency distribution of 64 codons over the coding and non-coding regions of 88 DNA from EMBL and GenBank database, using exponential fitting. Also, we regard 20 amino-acids as vocabulary, perform the same frequency analysis to the same database and show that amino-acids can be used as biological meaningful words for Zipf's approach. Our analysis suggests that a natural language structure may exist not only in the coding region of DNA but in the non-coding one of DNA.

AB - According to the Zipf's law, the distribution of rank-ordered frequency of words in the natural language can be modelled on the power law. In this paper, we examine the frequency distribution of 64 codons over the coding and non-coding regions of 88 DNA from EMBL and GenBank database, using exponential fitting. Also, we regard 20 amino-acids as vocabulary, perform the same frequency analysis to the same database and show that amino-acids can be used as biological meaningful words for Zipf's approach. Our analysis suggests that a natural language structure may exist not only in the coding region of DNA but in the non-coding one of DNA.

UR - https://www.scopus.com/pages/publications/9544250390

U2 - 10.1016/j.chaos.2004.07.027

DO - 10.1016/j.chaos.2004.07.027

M3 - Article

AN - SCOPUS:9544250390

SN - 0960-0779

VL - 23

SP - 1795

EP - 1807

JO - Chaos, Solitons and Fractals

JF - Chaos, Solitons and Fractals

IS - 5

ER -

Codon and amino-acid distribution in DNA

Abstract

Bibliographical note

ASJC Scopus subject areas

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