Complete genome sequence of Pseudoalteromonas sp. MEBiC 03485, isolated from deep-sea sediment

Min Seo Jeon; Jeong Joo Oh; Sang Il Han; Chulhwan Park; Changsu Lee; Yoon E. Choi

doi:10.1016/j.margen.2019.04.005

Complete genome sequence of Pseudoalteromonas sp. MEBiC 03485, isolated from deep-sea sediment

Min Seo Jeon, Jeong Joo Oh, Sang Il Han, Chulhwan Park, Changsu Lee, Yoon E. Choi

Research output: Contribution to journal › Article › peer-review

3 Citations (Scopus)

Abstract

Pseudoalteromonas strains are widely distributed in the marine environment and most have attracted considerable interest owing to their ability to synthesize biologically active metabolites. In this study, we report and describe the genome sequence of Pseudoalteromonas sp. MEBiC 03485, isolated from the deep-sea sediment of Pacific Ocean at a depth of 2000 m. The complete genome consisted of three contigs with a total genome size of 4,167,407 bp and a GC content of 40.76 l%, and was predicted to contain 4194 protein-coding genes and 131 non-coding RNA genes. The strain MEBiC 03485 genome was also shown to contain genes for diverse metabolic pathways. Genome analysis revealed that the genome of strain MEBiC 03485 was enriched with genes involved in signal transduction, mobile elements, and cold-adaptation, some of which might improve ecological fitness in the deep-sea environment. These findings improve our understanding of microbial adaptation strategies in deep-sea environments.

Original language	English
Article number	100680
Journal	Marine Genomics
Volume	48
DOIs	https://doi.org/10.1016/j.margen.2019.04.005
Publication status	Published - 2019 Dec

Bibliographical note

Funding Information:
This work was supported by a grant from the Marine Biotechnology Program of the Korea Institute of Marine Science and Technology Promotion (KIMST) funded by the Ministry of Oceans and Fisheries (MOF) (No. 20170488 ).

Publisher Copyright:
© 2019

Keywords

Cold adaptation
Mobile element
Pseudoalteromonas
Signal transduction
Whole genome sequence

ASJC Scopus subject areas

Aquatic Science
Genetics

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

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10.1016/j.margen.2019.04.005

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title = "Complete genome sequence of Pseudoalteromonas sp. MEBiC 03485, isolated from deep-sea sediment",

abstract = "Pseudoalteromonas strains are widely distributed in the marine environment and most have attracted considerable interest owing to their ability to synthesize biologically active metabolites. In this study, we report and describe the genome sequence of Pseudoalteromonas sp. MEBiC 03485, isolated from the deep-sea sediment of Pacific Ocean at a depth of 2000 m. The complete genome consisted of three contigs with a total genome size of 4,167,407 bp and a GC content of 40.76 l%, and was predicted to contain 4194 protein-coding genes and 131 non-coding RNA genes. The strain MEBiC 03485 genome was also shown to contain genes for diverse metabolic pathways. Genome analysis revealed that the genome of strain MEBiC 03485 was enriched with genes involved in signal transduction, mobile elements, and cold-adaptation, some of which might improve ecological fitness in the deep-sea environment. These findings improve our understanding of microbial adaptation strategies in deep-sea environments.",

keywords = "Cold adaptation, Mobile element, Pseudoalteromonas, Signal transduction, Whole genome sequence",

author = "Jeon, {Min Seo} and Oh, {Jeong Joo} and Han, {Sang Il} and Chulhwan Park and Changsu Lee and Choi, {Yoon E.}",

note = "Funding Information: This work was supported by a grant from the Marine Biotechnology Program of the Korea Institute of Marine Science and Technology Promotion (KIMST) funded by the Ministry of Oceans and Fisheries (MOF) (No. 20170488 ). Publisher Copyright: {\textcopyright} 2019",

year = "2019",

month = dec,

doi = "10.1016/j.margen.2019.04.005",

language = "English",

volume = "48",

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AU - Jeon, Min Seo

AU - Oh, Jeong Joo

AU - Han, Sang Il

AU - Park, Chulhwan

AU - Lee, Changsu

AU - Choi, Yoon E.

N1 - Funding Information: This work was supported by a grant from the Marine Biotechnology Program of the Korea Institute of Marine Science and Technology Promotion (KIMST) funded by the Ministry of Oceans and Fisheries (MOF) (No. 20170488 ). Publisher Copyright: © 2019

PY - 2019/12

Y1 - 2019/12

N2 - Pseudoalteromonas strains are widely distributed in the marine environment and most have attracted considerable interest owing to their ability to synthesize biologically active metabolites. In this study, we report and describe the genome sequence of Pseudoalteromonas sp. MEBiC 03485, isolated from the deep-sea sediment of Pacific Ocean at a depth of 2000 m. The complete genome consisted of three contigs with a total genome size of 4,167,407 bp and a GC content of 40.76 l%, and was predicted to contain 4194 protein-coding genes and 131 non-coding RNA genes. The strain MEBiC 03485 genome was also shown to contain genes for diverse metabolic pathways. Genome analysis revealed that the genome of strain MEBiC 03485 was enriched with genes involved in signal transduction, mobile elements, and cold-adaptation, some of which might improve ecological fitness in the deep-sea environment. These findings improve our understanding of microbial adaptation strategies in deep-sea environments.

AB - Pseudoalteromonas strains are widely distributed in the marine environment and most have attracted considerable interest owing to their ability to synthesize biologically active metabolites. In this study, we report and describe the genome sequence of Pseudoalteromonas sp. MEBiC 03485, isolated from the deep-sea sediment of Pacific Ocean at a depth of 2000 m. The complete genome consisted of three contigs with a total genome size of 4,167,407 bp and a GC content of 40.76 l%, and was predicted to contain 4194 protein-coding genes and 131 non-coding RNA genes. The strain MEBiC 03485 genome was also shown to contain genes for diverse metabolic pathways. Genome analysis revealed that the genome of strain MEBiC 03485 was enriched with genes involved in signal transduction, mobile elements, and cold-adaptation, some of which might improve ecological fitness in the deep-sea environment. These findings improve our understanding of microbial adaptation strategies in deep-sea environments.

KW - Cold adaptation

KW - Mobile element

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KW - Signal transduction

KW - Whole genome sequence

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SN - 1874-7787

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JO - Marine Genomics

JF - Marine Genomics

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ER -

Complete genome sequence of Pseudoalteromonas sp. MEBiC 03485, isolated from deep-sea sediment

Abstract

Bibliographical note

Keywords

ASJC Scopus subject areas

UN SDGs

Access to Document

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