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Enhancing Brain Source Reconstruction by Initializing 3-D Neural Networks With Physical Inverse Solutions

  • Marco Morik*
  • , Ali Hashemi
  • , Klaus Robert Muller
  • , Stefan Haufe
  • , Shinichi Nakajima*
  • *Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

Abstract

Reconstructing brain sources is a fundamental challenge in neuroscience, crucial for understanding brain function and dysfunction. Electroencephalography (EEG) signals have a high temporal resolution. However, identifying the correct spatial location of brain sources from these signals remains difficult due to the ill-posed structure of the problem. Traditional methods predominantly rely on manually crafted priors, missing the flexibility of data-driven learning, while recent deep learning approaches focus on end-to-end learning, typically using the physical information of the forward model only for generating training data. We propose the novel hybrid method 3D-PIUNet for EEG source localization that effectively integrates the strengths of traditional and deep learning techniques. 3D-PIUNet starts from an initial physics-informed estimate by using the pseudo inverse to map from measurements to source space. Secondly, by viewing the brain as a 3D volume, we use a 3D convolutional U-Net to capture spatial dependencies and refine the solution according to the learned data prior. Training the model relies on simulated pseudo-realistic brain source data, covering different source distributions. Trained on this data, our model significantly improves spatial accuracy, demonstrating superior performance over both traditional and end-to-end data-driven methods. Additionally, we validate our findings with real EEG data from a visual task, where 3D-PIUNet successfully identifies the visual cortex and reconstructs the expected temporal behavior, thereby showcasing its practical applicability.

Original languageEnglish
Pages (from-to)231-242
Number of pages12
JournalIEEE Transactions on Medical Imaging
Volume45
Issue number1
DOIs
Publication statusPublished - 2026

Bibliographical note

Publisher Copyright:
© 1982-2012 IEEE.

Keywords

  • Deep learning
  • EEG
  • inverse problems
  • neuroimaging
  • source localization

ASJC Scopus subject areas

  • Software
  • Radiological and Ultrasound Technology
  • Computer Science Applications
  • Electrical and Electronic Engineering

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