Evolutionary history of trihelix familyand their functional diversification

Qin Yao, Ma Xin, Yu Guanghui, Wang Qi, Wang Liang, Kong Lingrang, Kim Wook, Hong Wei Wang

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45 Citations (Scopus)


In this study, we carried out an evolutionary, transcriptional, and functional analyses of the trihelix transcription factor family. A total of 319 trihelix members, identified from 11 land plant species, were classified into five clades. The results of phylogeny indicate the binding domains of GT1 and GT2 diverged early in the existence of land plants. Genomic localization revealed that the trihelix family members were highly conserved among cereal species, even though some homeologs generated during the tetraploidy of maize were lost. Three-dimensional structural analyses and an examination of subcellular localization of this family supported the involvement of all five clades in transcriptional regulation. Furthermore, the family members from all clades in sorghum and rice showed a broad and dynamic expression pattern in response to abiotic stresses, indicating regulatory subfunctionalization of their original functions. This finding is further supported by the phenotypes of enhanced tolerance to cold, salt, and drought in transgenic plants overexpressing Sb06g023980 and Sb06g024110. In contrast, few Arobidopsis genes showed inducible expression under abiotic stress conditions, which may indicate a functional shift. Finally, our co-expression analysis points to the involvement of this family in various metabolic processes, implying their further functional divergence.

Original languageEnglish
Pages (from-to)499-510
Number of pages12
JournalDNA Research
Issue number5
Publication statusPublished - 2014 Oct 1

Bibliographical note

Funding Information:
This work was financially supported by the National Basic Research Program of China (973 Program, 2014CB138100) and the National Natural Science Foundation of China (no. 31200982). Also, thanks to the Korea University grant supported to W.K.

Publisher Copyright:
© The Author 2014.


  • Abiotic stress
  • Sorghum
  • Subfunctionalization
  • Trihelix

ASJC Scopus subject areas

  • Medicine(all)


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