Fast Correction of Eddy-Current and Susceptibility-Induced Distortions Using Rotation-Invariant Contrasts

the UNC/UMN Baby Connectome Project Consortium

doi:10.1007/978-3-030-59713-9_4

Fast Correction of Eddy-Current and Susceptibility-Induced Distortions Using Rotation-Invariant Contrasts

the UNC/UMN Baby Connectome Project Consortium

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Citation (Scopus)

Abstract

Diffusion MRI (dMRI) is typically time consuming as it involves acquiring a series of 3D volumes, each associated with a wave-vector in q-space that determines the diffusion direction and strength. The acquisition time is further increased when “blip-up blip-down” scans are acquired with opposite phase encoding directions (PEDs) to facilitate distortion correction. In this work, we show that geometric distortions can be corrected without acquiring with opposite PEDs for each wave-vector, and hence the acquisition time can be halved. Our method uses complimentary rotation-invariant contrasts across shells of different diffusion weightings. Distortion-free structural T1-/T2-weighted MRI is used as reference for nonlinear registration in correcting the distortions. Signal dropout and pileup are corrected with the help of spherical harmonics. To demonstrate that our method is robust to changes in image appearance, we show that distortion correction with good structural alignment can be achieved within minutes for dMRI data of infants between 1 to 24 months of age.

Original language	English
Title of host publication	Medical Image Computing and Computer Assisted Intervention – MICCAI 2020 - 23rd International Conference, Proceedings
Editors	Anne L. Martel, Purang Abolmaesumi, Danail Stoyanov, Diana Mateus, Maria A. Zuluaga, S. Kevin Zhou, Daniel Racoceanu, Leo Joskowicz
Publisher	Springer Science and Business Media Deutschland GmbH
Pages	34-43
Number of pages	10
ISBN (Print)	9783030597122
DOIs	https://doi.org/10.1007/978-3-030-59713-9_4
Publication status	Published - 2020
Event	23rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2020 - Lima, Peru Duration: 2020 Oct 4 → 2020 Oct 8

Publication series

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume	12262 LNCS
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Conference

Conference	23rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2020
Country/Territory	Peru
City	Lima
Period	20/10/4 → 20/10/8

Bibliographical note

Funding Information:
This work was supported in part by NIH grants (NS093842, AG053867, EB006733, MH104324, and MH110274) and the efforts of the UNC/UMN Baby Connectome Project Consortium.

Publisher Copyright:
© 2020, Springer Nature Switzerland AG.

Keywords

Eddy-current distortion
Rotation-invariant contrasts
Susceptibility-induced distortion

ASJC Scopus subject areas

Theoretical Computer Science
General Computer Science

Access to Document

10.1007/978-3-030-59713-9_4

Cite this

the UNC/UMN Baby Connectome Project Consortium (2020). Fast Correction of Eddy-Current and Susceptibility-Induced Distortions Using Rotation-Invariant Contrasts. In A. L. Martel, P. Abolmaesumi, D. Stoyanov, D. Mateus, M. A. Zuluaga, S. K. Zhou, D. Racoceanu, & L. Joskowicz (Eds.), Medical Image Computing and Computer Assisted Intervention – MICCAI 2020 - 23rd International Conference, Proceedings (pp. 34-43). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 12262 LNCS). Springer Science and Business Media Deutschland GmbH. https://doi.org/10.1007/978-3-030-59713-9_4

Fast Correction of Eddy-Current and Susceptibility-Induced Distortions Using Rotation-Invariant Contrasts. / the UNC/UMN Baby Connectome Project Consortium.
Medical Image Computing and Computer Assisted Intervention – MICCAI 2020 - 23rd International Conference, Proceedings. ed. / Anne L. Martel; Purang Abolmaesumi; Danail Stoyanov; Diana Mateus; Maria A. Zuluaga; S. Kevin Zhou; Daniel Racoceanu; Leo Joskowicz. Springer Science and Business Media Deutschland GmbH, 2020. p. 34-43 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 12262 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

the UNC/UMN Baby Connectome Project Consortium 2020, Fast Correction of Eddy-Current and Susceptibility-Induced Distortions Using Rotation-Invariant Contrasts. in AL Martel, P Abolmaesumi, D Stoyanov, D Mateus, MA Zuluaga, SK Zhou, D Racoceanu & L Joskowicz (eds), Medical Image Computing and Computer Assisted Intervention – MICCAI 2020 - 23rd International Conference, Proceedings. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 12262 LNCS, Springer Science and Business Media Deutschland GmbH, pp. 34-43, 23rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2020, Lima, Peru, 20/10/4. https://doi.org/10.1007/978-3-030-59713-9_4

the UNC/UMN Baby Connectome Project Consortium. Fast Correction of Eddy-Current and Susceptibility-Induced Distortions Using Rotation-Invariant Contrasts. In Martel AL, Abolmaesumi P, Stoyanov D, Mateus D, Zuluaga MA, Zhou SK, Racoceanu D, Joskowicz L, editors, Medical Image Computing and Computer Assisted Intervention – MICCAI 2020 - 23rd International Conference, Proceedings. Springer Science and Business Media Deutschland GmbH. 2020. p. 34-43. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). doi: 10.1007/978-3-030-59713-9_4

the UNC/UMN Baby Connectome Project Consortium. / Fast Correction of Eddy-Current and Susceptibility-Induced Distortions Using Rotation-Invariant Contrasts. Medical Image Computing and Computer Assisted Intervention – MICCAI 2020 - 23rd International Conference, Proceedings. editor / Anne L. Martel ; Purang Abolmaesumi ; Danail Stoyanov ; Diana Mateus ; Maria A. Zuluaga ; S. Kevin Zhou ; Daniel Racoceanu ; Leo Joskowicz. Springer Science and Business Media Deutschland GmbH, 2020. pp. 34-43 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

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Fast Correction of Eddy-Current and Susceptibility-Induced Distortions Using Rotation-Invariant Contrasts

Abstract

Publication series

Conference

Bibliographical note

Keywords

ASJC Scopus subject areas

Access to Document

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