Fluorescent visualization of nucleolar g-quadruplex rna and dynamics of cytoplasm and intranuclear viscosity

Le Yu, Peter Verwilst, Inseob Shim, Yu Qiang Zhao, Ying Zhou, Jong Seung Kim

Research output: Contribution to journalArticlepeer-review

15 Citations (Scopus)

Abstract

The nucleolus, the locus of ribosome biogenesis, was found to be the predominant intracellular target of a new fluorescent probe, V-P1. In solution, the probe demonstrated both a selectivity to RNA G-quadruplexes and a sensitivity to the viscosity, while G-quadruplex binding did not disturb the viscosity sensing. In cells, confocal and fluorescence lifetime imaging, combined with digestion and competition experiments, lent support to the hypothesis of an RNA-based G-quadruplex as the intracellular target, postulated to be nucleolar ribosomal RNA (rRNA). The probe demonstrated a high sensitivity to viscosity in both the cytoplasm and the nuclear compartment and was used to precisely interrogate the viscosity changes resulting from diverse stimuli, such as temperature, monensin treatment, and etoposide-induced apoptosis. Owing to the putative rRNA G-quadruplex binding in vitro and in vivo, and further combined with a relatively low degree of toxicity, the dye enabled the interrogation of cytoplasm and intranuclear viscosity changes under diverse conditions and found applications in studying the influence and significance of cytoplasm and intranuclear viscosity as well as in gaining insight into the native secondary structure of rRNA in nucleoli.

Original languageEnglish
Pages (from-to)2725-2739
Number of pages15
JournalCCS Chemistry
Volume3
Issue number11
DOIs
Publication statusPublished - 2021

Bibliographical note

Funding Information:
This work was supported by CRI project (no. 2018R1A3B1052702; J.S.K.) from the National Research Foundation of Korea (NRF, by the China Scholarship Fund (CSC no. 201907030009; L.Y.), and by the Interne Fondsen KU Leuven/Internal Funds KU Leuven (STG/19/ 029; P.V.).

Funding Information:
This work was supported financially by the National Natural Science Foundation of China (nos. 21672185, 22067019; Y.Z.), the National Research Foundation of Korea (NRF) funded by the Ministry of Science and ICT (CRI project no. 2018R1A3B1052702; J.S.K.), the Basic Science Research Program funded by the Ministry of Education (2017R1D1A1B03032561; P.V.), and the Korea Research Fellowship Program funded by the Ministry of Science and ICT through the National Research Foundation of Korea (no. 2016H1D3A1938052; P.V.).

Publisher Copyright:
© 2021 by The Korean Society of Food Science and Nutrition.

Keywords

  • Fluorescence imaging
  • G-quadruplex RNA
  • Intranuclear viscosity
  • Nucleoli

ASJC Scopus subject areas

  • General Chemistry

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