Nocardioides litoris sp. nov., isolated from the taean seashore

Dong Wan Lee; Aslan Hwanhwi Lee; Hanbyul Lee; Jae Jin Kim; Jong Seong Khim; Un Hyuk Yim; Beom Seok Kim

doi:10.1099/ijsem.0.001954

Nocardioides litoris sp. nov., isolated from the taean seashore

Dong Wan Lee, Aslan Hwanhwi Lee, Hanbyul Lee, Jae Jin Kim, Jong Seong Khim, Un Hyuk Yim, Beom Seok Kim

Research output: Contribution to journal › Article › peer-review

4 Citations (Scopus)

Abstract

A novel Gram-stain-positive, irregularly rod-shaped actinomycete, designated strain 002-2^T, was isolated from sand beach sediment collected from the Taean seashore, Republic of Korea. Cells were aerobic, oxidase-negative and catalase-positive. Colonies of cells were bright yellow, circular, smooth and convex. The diagnostic diamino acid in the cell wall was LLdiaminopimelic acid. The predominant menaquinone was MK-8(H₄). The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, an unknown phospholipid and two unknown amino phospholipids. The major fatty acids were iso-C_16:0 and C_17:1ѡ8c. The DNA G+C content was 68.8 mol%. 16S rRNA gene sequence analysis revealed that strain 002-2^T belongs to the family Nocardioidaceae and formed a cluster with Nocardioides rubroscoriae Sco- A25^T (98.1% sequence similarity) and Nocardioides plantarum NCIMB 12834^T (97.6 %). On the basis of the phenotypic and phylogenetic data, strain 002-2^T (=KCTC 39838^T=DSM 103718^T) is considered to represent a novel species of the genus Nocardioides, for which the name Nocardioides litoris sp. nov. is proposed.

Original language	English
Pages (from-to)	2332-2336
Number of pages	5
Journal	International Journal of Systematic and Evolutionary Microbiology
Volume	67
Issue number	7
DOIs	https://doi.org/10.1099/ijsem.0.001954
Publication status	Published - 2017 Jul

Keywords

Actinobacteria
Beach sediment
Nocardioides
Taean seashore

ASJC Scopus subject areas

Microbiology
Ecology, Evolution, Behavior and Systematics

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10.1099/ijsem.0.001954

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@article{320ff89ca6c34e36b75ffae1eda26613,

title = "Nocardioides litoris sp. nov., isolated from the taean seashore",

abstract = "A novel Gram-stain-positive, irregularly rod-shaped actinomycete, designated strain 002-2T, was isolated from sand beach sediment collected from the Taean seashore, Republic of Korea. Cells were aerobic, oxidase-negative and catalase-positive. Colonies of cells were bright yellow, circular, smooth and convex. The diagnostic diamino acid in the cell wall was LLdiaminopimelic acid. The predominant menaquinone was MK-8(H4). The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, an unknown phospholipid and two unknown amino phospholipids. The major fatty acids were iso-C16:0 and C17:1ѡ8c. The DNA G+C content was 68.8 mol%. 16S rRNA gene sequence analysis revealed that strain 002-2T belongs to the family Nocardioidaceae and formed a cluster with Nocardioides rubroscoriae Sco- A25T (98.1% sequence similarity) and Nocardioides plantarum NCIMB 12834T (97.6 %). On the basis of the phenotypic and phylogenetic data, strain 002-2T (=KCTC 39838T=DSM 103718T) is considered to represent a novel species of the genus Nocardioides, for which the name Nocardioides litoris sp. nov. is proposed.",

keywords = "Actinobacteria, Beach sediment, Nocardioides, Taean seashore",

author = "Lee, {Dong Wan} and Lee, {Aslan Hwanhwi} and Hanbyul Lee and Kim, {Jae Jin} and Khim, {Jong Seong} and Yim, {Un Hyuk} and Kim, {Beom Seok}",

note = "Funding Information: This work was supported by the project entitled {\textquoteleft}Oil Spill Environmental Impact Assessment and Environmental Restoration (PM57431){\textquoteright} funded by the Ministry of Oceans and Fisheries of Korea and the BK21 Plus program in 2013 (Project No. 21A20130012270) funded by National Research Foundation of Korea (NRF). Publisher Copyright: {\textcopyright} 2017 IUMS.",

year = "2017",

month = jul,

doi = "10.1099/ijsem.0.001954",

language = "English",

volume = "67",

pages = "2332--2336",

journal = "International Journal of Systematic and Evolutionary Microbiology",

issn = "1466-5026",

number = "7",

}

TY - JOUR

T1 - Nocardioides litoris sp. nov., isolated from the taean seashore

AU - Lee, Dong Wan

AU - Lee, Aslan Hwanhwi

AU - Lee, Hanbyul

AU - Kim, Jae Jin

AU - Khim, Jong Seong

AU - Yim, Un Hyuk

AU - Kim, Beom Seok

N1 - Funding Information: This work was supported by the project entitled ‘Oil Spill Environmental Impact Assessment and Environmental Restoration (PM57431)’ funded by the Ministry of Oceans and Fisheries of Korea and the BK21 Plus program in 2013 (Project No. 21A20130012270) funded by National Research Foundation of Korea (NRF). Publisher Copyright: © 2017 IUMS.

PY - 2017/7

Y1 - 2017/7

N2 - A novel Gram-stain-positive, irregularly rod-shaped actinomycete, designated strain 002-2T, was isolated from sand beach sediment collected from the Taean seashore, Republic of Korea. Cells were aerobic, oxidase-negative and catalase-positive. Colonies of cells were bright yellow, circular, smooth and convex. The diagnostic diamino acid in the cell wall was LLdiaminopimelic acid. The predominant menaquinone was MK-8(H4). The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, an unknown phospholipid and two unknown amino phospholipids. The major fatty acids were iso-C16:0 and C17:1ѡ8c. The DNA G+C content was 68.8 mol%. 16S rRNA gene sequence analysis revealed that strain 002-2T belongs to the family Nocardioidaceae and formed a cluster with Nocardioides rubroscoriae Sco- A25T (98.1% sequence similarity) and Nocardioides plantarum NCIMB 12834T (97.6 %). On the basis of the phenotypic and phylogenetic data, strain 002-2T (=KCTC 39838T=DSM 103718T) is considered to represent a novel species of the genus Nocardioides, for which the name Nocardioides litoris sp. nov. is proposed.

AB - A novel Gram-stain-positive, irregularly rod-shaped actinomycete, designated strain 002-2T, was isolated from sand beach sediment collected from the Taean seashore, Republic of Korea. Cells were aerobic, oxidase-negative and catalase-positive. Colonies of cells were bright yellow, circular, smooth and convex. The diagnostic diamino acid in the cell wall was LLdiaminopimelic acid. The predominant menaquinone was MK-8(H4). The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, an unknown phospholipid and two unknown amino phospholipids. The major fatty acids were iso-C16:0 and C17:1ѡ8c. The DNA G+C content was 68.8 mol%. 16S rRNA gene sequence analysis revealed that strain 002-2T belongs to the family Nocardioidaceae and formed a cluster with Nocardioides rubroscoriae Sco- A25T (98.1% sequence similarity) and Nocardioides plantarum NCIMB 12834T (97.6 %). On the basis of the phenotypic and phylogenetic data, strain 002-2T (=KCTC 39838T=DSM 103718T) is considered to represent a novel species of the genus Nocardioides, for which the name Nocardioides litoris sp. nov. is proposed.

KW - Actinobacteria

KW - Beach sediment

KW - Nocardioides

KW - Taean seashore

UR - http://www.scopus.com/inward/record.url?scp=85027104488&partnerID=8YFLogxK

U2 - 10.1099/ijsem.0.001954

DO - 10.1099/ijsem.0.001954

M3 - Article

C2 - 28777069

AN - SCOPUS:85027104488

SN - 1466-5026

VL - 67

SP - 2332

EP - 2336

JO - International Journal of Systematic and Evolutionary Microbiology

JF - International Journal of Systematic and Evolutionary Microbiology

IS - 7

ER -

Nocardioides litoris sp. nov., isolated from the taean seashore

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