Pedobacter jeongneungensis sp. nov., isolated from forest soil

Jaejoon Jung; Woojun Park

doi:10.1007/s12275-012-1629-0

Pedobacter jeongneungensis sp. nov., isolated from forest soil

Jaejoon Jung, Woojun Park

Research output: Contribution to journal › Article › peer-review

8 Citations (Scopus)

Abstract

Strain BH45^T was isolated from forest soil of Mt. Bukhan in Jeongneung, Seoul, Korea. The Gram-staining-negative strain BH45^T grows at 4-30°C (optimum of 25-30°C) and between pH 5-8 (optimum of pH 6-8). Its major cellular fatty acids are C_18:3ω6c (6,9,12) and C_10:0. The G+C content of genomic DNA was 40. 2 mol%. The major respiratory quinone system in strain BH45^T is menaquinone-7. Phylogenetic analysis based on 16S rRNA gene sequences indicates that strain BH45^T is closely related to the genus Pedobacter. Sequence similarities with P. terrae KCTC 12762^T, P. suwonensis KACC 11317^T, P. soli KACC 14939^T, P. alluvionis DSM 19624^T, P. roseus KCCM 42272^T, P. yonginense KCTC 22721^T were 97. 5, 97. 1, 97. 0, 97. 0, 97. 0, and 96. 0%, respectively. DNA-DNA hybridization results distinguish strain BH45^T from two Pedobacter species with high 16S rRNA gene sequence similarities. According to the phenotypic and molecular data, the strain BH45^T clearly represents a novel species within the genus Pedobacter; thus, the name Pedobacter jeongneungensis sp. nov. is proposed for this strain. The type strain is BH45^T (=KACC 15514^T =JCM 17626^T).

Original language	English
Pages (from-to)	660-664
Number of pages	5
Journal	Journal of Microbiology
Volume	50
Issue number	4
DOIs	https://doi.org/10.1007/s12275-012-1629-0
Publication status	Published - 2012 Aug

Bibliographical note

Funding Information:
This work was supported by a grant from the Next-Generation BioGreen 21 Program (PJ00820803), Rural Development Administration, Republic of Korea.

Copyright:
Copyright 2013 Elsevier B.V., All rights reserved.

Keywords

Bacteroidetes
soil
sphingolipid

ASJC Scopus subject areas

Microbiology
Applied Microbiology and Biotechnology

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10.1007/s12275-012-1629-0

Cite this

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title = "Pedobacter jeongneungensis sp. nov., isolated from forest soil",

abstract = "Strain BH45T was isolated from forest soil of Mt. Bukhan in Jeongneung, Seoul, Korea. The Gram-staining-negative strain BH45T grows at 4-30°C (optimum of 25-30°C) and between pH 5-8 (optimum of pH 6-8). Its major cellular fatty acids are C18:3ω6c (6,9,12) and C10:0. The G+C content of genomic DNA was 40. 2 mol%. The major respiratory quinone system in strain BH45T is menaquinone-7. Phylogenetic analysis based on 16S rRNA gene sequences indicates that strain BH45T is closely related to the genus Pedobacter. Sequence similarities with P. terrae KCTC 12762T, P. suwonensis KACC 11317T, P. soli KACC 14939T, P. alluvionis DSM 19624T, P. roseus KCCM 42272T, P. yonginense KCTC 22721T were 97. 5, 97. 1, 97. 0, 97. 0, 97. 0, and 96. 0%, respectively. DNA-DNA hybridization results distinguish strain BH45T from two Pedobacter species with high 16S rRNA gene sequence similarities. According to the phenotypic and molecular data, the strain BH45T clearly represents a novel species within the genus Pedobacter; thus, the name Pedobacter jeongneungensis sp. nov. is proposed for this strain. The type strain is BH45T (=KACC 15514T =JCM 17626T).",

keywords = "Bacteroidetes, soil, sphingolipid",

author = "Jaejoon Jung and Woojun Park",

note = "Funding Information: This work was supported by a grant from the Next-Generation BioGreen 21 Program (PJ00820803), Rural Development Administration, Republic of Korea. Copyright: Copyright 2013 Elsevier B.V., All rights reserved.",

year = "2012",

month = aug,

doi = "10.1007/s12275-012-1629-0",

language = "English",

volume = "50",

pages = "660--664",

journal = "Journal of Microbiology",

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AU - Jung, Jaejoon

AU - Park, Woojun

N1 - Funding Information: This work was supported by a grant from the Next-Generation BioGreen 21 Program (PJ00820803), Rural Development Administration, Republic of Korea. Copyright: Copyright 2013 Elsevier B.V., All rights reserved.

PY - 2012/8

Y1 - 2012/8

N2 - Strain BH45T was isolated from forest soil of Mt. Bukhan in Jeongneung, Seoul, Korea. The Gram-staining-negative strain BH45T grows at 4-30°C (optimum of 25-30°C) and between pH 5-8 (optimum of pH 6-8). Its major cellular fatty acids are C18:3ω6c (6,9,12) and C10:0. The G+C content of genomic DNA was 40. 2 mol%. The major respiratory quinone system in strain BH45T is menaquinone-7. Phylogenetic analysis based on 16S rRNA gene sequences indicates that strain BH45T is closely related to the genus Pedobacter. Sequence similarities with P. terrae KCTC 12762T, P. suwonensis KACC 11317T, P. soli KACC 14939T, P. alluvionis DSM 19624T, P. roseus KCCM 42272T, P. yonginense KCTC 22721T were 97. 5, 97. 1, 97. 0, 97. 0, 97. 0, and 96. 0%, respectively. DNA-DNA hybridization results distinguish strain BH45T from two Pedobacter species with high 16S rRNA gene sequence similarities. According to the phenotypic and molecular data, the strain BH45T clearly represents a novel species within the genus Pedobacter; thus, the name Pedobacter jeongneungensis sp. nov. is proposed for this strain. The type strain is BH45T (=KACC 15514T =JCM 17626T).

AB - Strain BH45T was isolated from forest soil of Mt. Bukhan in Jeongneung, Seoul, Korea. The Gram-staining-negative strain BH45T grows at 4-30°C (optimum of 25-30°C) and between pH 5-8 (optimum of pH 6-8). Its major cellular fatty acids are C18:3ω6c (6,9,12) and C10:0. The G+C content of genomic DNA was 40. 2 mol%. The major respiratory quinone system in strain BH45T is menaquinone-7. Phylogenetic analysis based on 16S rRNA gene sequences indicates that strain BH45T is closely related to the genus Pedobacter. Sequence similarities with P. terrae KCTC 12762T, P. suwonensis KACC 11317T, P. soli KACC 14939T, P. alluvionis DSM 19624T, P. roseus KCCM 42272T, P. yonginense KCTC 22721T were 97. 5, 97. 1, 97. 0, 97. 0, 97. 0, and 96. 0%, respectively. DNA-DNA hybridization results distinguish strain BH45T from two Pedobacter species with high 16S rRNA gene sequence similarities. According to the phenotypic and molecular data, the strain BH45T clearly represents a novel species within the genus Pedobacter; thus, the name Pedobacter jeongneungensis sp. nov. is proposed for this strain. The type strain is BH45T (=KACC 15514T =JCM 17626T).

KW - Bacteroidetes

KW - soil

KW - sphingolipid

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ER -

Pedobacter jeongneungensis sp. nov., isolated from forest soil

Abstract

Bibliographical note

Keywords

ASJC Scopus subject areas

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