Prediction rule generation of MHC class I binding peptides using ANN and GA

Yeon Jin Cho; Hyeoncheol Kim; Heung Bum Oh

doi:10.1007/11539087_133

Prediction rule generation of MHC class I binding peptides using ANN and GA

Yeon Jin Cho^*, Hyeoncheol Kim, Heung Bum Oh

^*Corresponding author for this work

Research output: Contribution to journal › Conference article › peer-review

2 Citations (Scopus)

Abstract

A new method is proposed for generating if-then rules to predict peptide binding to class I MHC proteins, from the amino acid sequence of any protein with known binders and non-binders. In this paper, we present an approach based on artificial neural networks (ANN) and knowledge-based genetic algorithm (KBGA) to predict the binding of peptides to MHC class I molecules. Our method includes rule extraction from a trained neural network and then enhancing the extracted rules by genetic evolution. Experimental results show that the method could generate new rules for MHC class I binding peptides prediction.

Original language	English
Pages (from-to)	1009-1016
Number of pages	8
Journal	Lecture Notes in Computer Science
Volume	3610
Issue number	PART I
DOIs	https://doi.org/10.1007/11539087_133
Publication status	Published - 2005
Event	First International Conference on Natural Computation, ICNC 2005 - Changsha, China Duration: 2005 Aug 27 → 2005 Aug 29

ASJC Scopus subject areas

Theoretical Computer Science
General Computer Science

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10.1007/11539087_133

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title = "Prediction rule generation of MHC class I binding peptides using ANN and GA",

abstract = "A new method is proposed for generating if-then rules to predict peptide binding to class I MHC proteins, from the amino acid sequence of any protein with known binders and non-binders. In this paper, we present an approach based on artificial neural networks (ANN) and knowledge-based genetic algorithm (KBGA) to predict the binding of peptides to MHC class I molecules. Our method includes rule extraction from a trained neural network and then enhancing the extracted rules by genetic evolution. Experimental results show that the method could generate new rules for MHC class I binding peptides prediction.",

author = "Cho, \{Yeon Jin\} and Hyeoncheol Kim and Oh, \{Heung Bum\}",

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AU - Cho, Yeon Jin

AU - Kim, Hyeoncheol

AU - Oh, Heung Bum

PY - 2005

Y1 - 2005

N2 - A new method is proposed for generating if-then rules to predict peptide binding to class I MHC proteins, from the amino acid sequence of any protein with known binders and non-binders. In this paper, we present an approach based on artificial neural networks (ANN) and knowledge-based genetic algorithm (KBGA) to predict the binding of peptides to MHC class I molecules. Our method includes rule extraction from a trained neural network and then enhancing the extracted rules by genetic evolution. Experimental results show that the method could generate new rules for MHC class I binding peptides prediction.

AB - A new method is proposed for generating if-then rules to predict peptide binding to class I MHC proteins, from the amino acid sequence of any protein with known binders and non-binders. In this paper, we present an approach based on artificial neural networks (ANN) and knowledge-based genetic algorithm (KBGA) to predict the binding of peptides to MHC class I molecules. Our method includes rule extraction from a trained neural network and then enhancing the extracted rules by genetic evolution. Experimental results show that the method could generate new rules for MHC class I binding peptides prediction.

UR - https://www.scopus.com/pages/publications/26844482649

U2 - 10.1007/11539087_133

DO - 10.1007/11539087_133

M3 - Conference article

AN - SCOPUS:26844482649

SN - 0302-9743

VL - 3610

SP - 1009

EP - 1016

JO - Lecture Notes in Computer Science

JF - Lecture Notes in Computer Science

IS - PART I

T2 - First International Conference on Natural Computation, ICNC 2005

Y2 - 27 August 2005 through 29 August 2005

ER -

Prediction rule generation of MHC class I binding peptides using ANN and GA

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