The complete mitochondrial genome of Trematomus loennbergii (Perciformes, Nototheniidae)

Eunkyung Choi; Tae Eul Im; Seung Jae Lee; Euna Jo; Jinmu Kim; Sun Hee Kim; Young Min Chi; Jeong Hoon Kim; Hyun Park

doi:10.1080/23802359.2021.1899070

The complete mitochondrial genome of Trematomus loennbergii (Perciformes, Nototheniidae)

Eunkyung Choi, Tae Eul Im, Seung Jae Lee, Euna Jo, Jinmu Kim, Sun Hee Kim, Young Min Chi, Jeong Hoon Kim, Hyun Park

Department of Biosystems and Biotechnology

Research output: Contribution to journal › Article › peer-review

2 Citations (Scopus)

Abstract

The complete mitochondrial genome of Trematomus loennbergii was studied using NGS technology with PacBio platform. The mitochondrial genome size was 19,374bp and it had 13 protein-coding genes, 22 tRNAs and 2 rRNAs. There were 4 types of stop codons which were TAA, TAG, AGG and T(AA) but start codon type was only one (ATG). The contents of GC were 44.09% and AT contents were 55.91%. To conduct phylogenetic analysis, 12 species in 3 families were used. The result suggested that T. loennbergii was close to Pagothenia borchgrevinki in Nototheniidae. This study would provide a fundamental data for molecular evolution of T. loennbergii.

Original language	English
Pages (from-to)	1032-1033
Number of pages	2
Journal	Mitochondrial DNA Part B: Resources
Volume	6
Issue number	3
DOIs	https://doi.org/10.1080/23802359.2021.1899070
Publication status	Published - 2021

Keywords

Mitochondrial genome
PacBio
Scaly rockcod
Trematomus loennbergii

ASJC Scopus subject areas

Molecular Biology
Genetics

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10.1080/23802359.2021.1899070

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title = "The complete mitochondrial genome of Trematomus loennbergii (Perciformes, Nototheniidae)",

abstract = "The complete mitochondrial genome of Trematomus loennbergii was studied using NGS technology with PacBio platform. The mitochondrial genome size was 19,374bp and it had 13 protein-coding genes, 22 tRNAs and 2 rRNAs. There were 4 types of stop codons which were TAA, TAG, AGG and T(AA) but start codon type was only one (ATG). The contents of GC were 44.09% and AT contents were 55.91%. To conduct phylogenetic analysis, 12 species in 3 families were used. The result suggested that T. loennbergii was close to Pagothenia borchgrevinki in Nototheniidae. This study would provide a fundamental data for molecular evolution of T. loennbergii.",

keywords = "Mitochondrial genome, PacBio, Scaly rockcod, Trematomus loennbergii",

author = "Eunkyung Choi and Im, {Tae Eul} and Lee, {Seung Jae} and Euna Jo and Jinmu Kim and Kim, {Sun Hee} and Chi, {Young Min} and Kim, {Jeong Hoon} and Hyun Park",

note = "Funding Information: This research was supported by the Ecosystem Structure and Function of Marine Protected Area (MPA) in Antarctica project (PM20060) funded by the Ministry of Oceans and Fisheries under Grant 20170336. Publisher Copyright: {\textcopyright} 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.",

year = "2021",

doi = "10.1080/23802359.2021.1899070",

language = "English",

volume = "6",

pages = "1032--1033",

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T1 - The complete mitochondrial genome of Trematomus loennbergii (Perciformes, Nototheniidae)

AU - Choi, Eunkyung

AU - Im, Tae Eul

AU - Lee, Seung Jae

AU - Jo, Euna

AU - Kim, Jinmu

AU - Kim, Sun Hee

AU - Chi, Young Min

AU - Kim, Jeong Hoon

AU - Park, Hyun

N1 - Funding Information: This research was supported by the Ecosystem Structure and Function of Marine Protected Area (MPA) in Antarctica project (PM20060) funded by the Ministry of Oceans and Fisheries under Grant 20170336. Publisher Copyright: © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

PY - 2021

Y1 - 2021

N2 - The complete mitochondrial genome of Trematomus loennbergii was studied using NGS technology with PacBio platform. The mitochondrial genome size was 19,374bp and it had 13 protein-coding genes, 22 tRNAs and 2 rRNAs. There were 4 types of stop codons which were TAA, TAG, AGG and T(AA) but start codon type was only one (ATG). The contents of GC were 44.09% and AT contents were 55.91%. To conduct phylogenetic analysis, 12 species in 3 families were used. The result suggested that T. loennbergii was close to Pagothenia borchgrevinki in Nototheniidae. This study would provide a fundamental data for molecular evolution of T. loennbergii.

AB - The complete mitochondrial genome of Trematomus loennbergii was studied using NGS technology with PacBio platform. The mitochondrial genome size was 19,374bp and it had 13 protein-coding genes, 22 tRNAs and 2 rRNAs. There were 4 types of stop codons which were TAA, TAG, AGG and T(AA) but start codon type was only one (ATG). The contents of GC were 44.09% and AT contents were 55.91%. To conduct phylogenetic analysis, 12 species in 3 families were used. The result suggested that T. loennbergii was close to Pagothenia borchgrevinki in Nototheniidae. This study would provide a fundamental data for molecular evolution of T. loennbergii.

KW - Mitochondrial genome

KW - PacBio

KW - Scaly rockcod

KW - Trematomus loennbergii

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M3 - Article

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SN - 2380-2359

VL - 6

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JF - Mitochondrial DNA Part B: Resources

IS - 3

ER -

The complete mitochondrial genome of Trematomus loennbergii (Perciformes, Nototheniidae)

Abstract

Keywords

ASJC Scopus subject areas

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