The complete plastome sequence of Diospyros blancoi A. DC. (Ebenaceae)

Sangjin Jo; Hoe Won Kim; Young Kee Kim; Se Hwan Cheon; Ki Joong Kim

doi:10.1080/23802359.2016.1219647

The complete plastome sequence of Diospyros blancoi A. DC. (Ebenaceae)

Sangjin Jo, Hoe Won Kim, Young Kee Kim, Se Hwan Cheon, Ki Joong Kim

Department of Life Sciences

Research output: Contribution to journal › Article › peer-review

3 Citations (Scopus)

Abstract

The plastome sequences of Diospyros blancoi A. DC. (Ebenaceae) were completed in this study (NCBI acc. no. KX426216). The gene order and structure of the D. blancoi plastome are collinear with the typical plastome of land plants. The complete plastome size is 157,745 bp in length and consists of a large single-copy region of 87,246 bp and a small single-copy region of 18,323 bp, which are separated by a pair of 26,088 bp-long inverted repeat regions. The overall A-T content of the plastome sequence is 62.6%. The plastome contains 113 genes, of which 79 are protein-coding genes, 30 are tRNA genes, and 4 are rRNA genes. Sixteen genes contain one intron and two genes have two introns. A total of 45 simple sequence loci were identified from the genome. Phylogenetic analysis revealed that D. blancoi is a sister group of Primulaceae with 100% bootstrap support.

Original language	English
Pages (from-to)	690-692
Number of pages	3
Journal	Mitochondrial DNA Part B: Resources
Volume	1
Issue number	1
DOIs	https://doi.org/10.1080/23802359.2016.1219647
Publication status	Published - 2016

Keywords

Diospyros blancoi
Ebenaceae
Plastome
Tropical fruit

ASJC Scopus subject areas

Molecular Biology
Genetics

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10.1080/23802359.2016.1219647

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title = "The complete plastome sequence of Diospyros blancoi A. DC. (Ebenaceae)",

abstract = "The plastome sequences of Diospyros blancoi A. DC. (Ebenaceae) were completed in this study (NCBI acc. no. KX426216). The gene order and structure of the D. blancoi plastome are collinear with the typical plastome of land plants. The complete plastome size is 157,745 bp in length and consists of a large single-copy region of 87,246 bp and a small single-copy region of 18,323 bp, which are separated by a pair of 26,088 bp-long inverted repeat regions. The overall A-T content of the plastome sequence is 62.6%. The plastome contains 113 genes, of which 79 are protein-coding genes, 30 are tRNA genes, and 4 are rRNA genes. Sixteen genes contain one intron and two genes have two introns. A total of 45 simple sequence loci were identified from the genome. Phylogenetic analysis revealed that D. blancoi is a sister group of Primulaceae with 100% bootstrap support.",

keywords = "Diospyros blancoi, Ebenaceae, Plastome, Tropical fruit",

author = "Sangjin Jo and Kim, {Hoe Won} and Kim, {Young Kee} and Cheon, {Se Hwan} and Kim, {Ki Joong}",

note = "Funding Information: This work was supported by the National Research Foundation of Korea (NRF) [NRF-2015M3A9B8030588 and NRF-2015M3A9B8047398]. Publisher Copyright: {\textcopyright} 2016 The Author(s).",

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AU - Cheon, Se Hwan

AU - Kim, Ki Joong

PY - 2016

Y1 - 2016

N2 - The plastome sequences of Diospyros blancoi A. DC. (Ebenaceae) were completed in this study (NCBI acc. no. KX426216). The gene order and structure of the D. blancoi plastome are collinear with the typical plastome of land plants. The complete plastome size is 157,745 bp in length and consists of a large single-copy region of 87,246 bp and a small single-copy region of 18,323 bp, which are separated by a pair of 26,088 bp-long inverted repeat regions. The overall A-T content of the plastome sequence is 62.6%. The plastome contains 113 genes, of which 79 are protein-coding genes, 30 are tRNA genes, and 4 are rRNA genes. Sixteen genes contain one intron and two genes have two introns. A total of 45 simple sequence loci were identified from the genome. Phylogenetic analysis revealed that D. blancoi is a sister group of Primulaceae with 100% bootstrap support.

AB - The plastome sequences of Diospyros blancoi A. DC. (Ebenaceae) were completed in this study (NCBI acc. no. KX426216). The gene order and structure of the D. blancoi plastome are collinear with the typical plastome of land plants. The complete plastome size is 157,745 bp in length and consists of a large single-copy region of 87,246 bp and a small single-copy region of 18,323 bp, which are separated by a pair of 26,088 bp-long inverted repeat regions. The overall A-T content of the plastome sequence is 62.6%. The plastome contains 113 genes, of which 79 are protein-coding genes, 30 are tRNA genes, and 4 are rRNA genes. Sixteen genes contain one intron and two genes have two introns. A total of 45 simple sequence loci were identified from the genome. Phylogenetic analysis revealed that D. blancoi is a sister group of Primulaceae with 100% bootstrap support.

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The complete plastome sequence of Diospyros blancoi A. DC. (Ebenaceae)

Abstract

Keywords

ASJC Scopus subject areas

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