The complete plastome sequences of Mangifera indica L. (Anacardiaceae)

Sangjin Jo; Hoe Won Kim; Young Kee Kim; Jung Yeon Sohn; Se Hwan Cheon; Ki Joong Kim

doi:10.1080/23802359.2017.1390407

The complete plastome sequences of Mangifera indica L. (Anacardiaceae)

Sangjin Jo, Hoe Won Kim, Young Kee Kim, Jung Yeon Sohn, Se Hwan Cheon, Ki Joong Kim

Department of Life Sciences

Research output: Contribution to journal › Article › peer-review

4 Citations (Scopus)

Abstract

In this study, we determined the complete plastome sequence of Mangifera indica L. (Anacardiaceae) (NCBI acc. no. KX871231). The complete plastome is 157,780 bp in length, and consists of a large single copy of 86,673 bp and a small single copy of 18,349 bp, separated by two inverted repeats of 25,792 bp. The plastome contains 112 genes, of which 78 are protein-coding genes, 30 are tRNA genes, and four are rRNA genes. Sixteen genes contain one intron and two genes have two introns. The average A-T content of the plastome is 62.1%. The M. indica plastome has approximately 15 kb inversion between trnT-UGU and trnT-GGU. We identify a palindromic repeat of 18 bp (ATTCTTTTTTTTTTTTTT/AAAAAAAAAAAAAAGAAT) near the inversion breakpoints of M. indica plastome. Phylogenetic analysis revealed that M. indica is a sister group of Rhus chinensis with 100% bootstrap support. Anacardiaceae clade is a sister group of Boswellia sacra (Burseraceae) with 100% bootstrap support.

Original language	English
Pages (from-to)	698-700
Number of pages	3
Journal	Mitochondrial DNA Part B: Resources
Volume	2
Issue number	2
DOIs	https://doi.org/10.1080/23802359.2017.1390407
Publication status	Published - 2017 Dec 20

Keywords

Anacardiaceae
Mangifera indica
Plastome
large inversion
mango

ASJC Scopus subject areas

Molecular Biology
Genetics

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10.1080/23802359.2017.1390407

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title = "The complete plastome sequences of Mangifera indica L. (Anacardiaceae)",

abstract = "In this study, we determined the complete plastome sequence of Mangifera indica L. (Anacardiaceae) (NCBI acc. no. KX871231). The complete plastome is 157,780 bp in length, and consists of a large single copy of 86,673 bp and a small single copy of 18,349 bp, separated by two inverted repeats of 25,792 bp. The plastome contains 112 genes, of which 78 are protein-coding genes, 30 are tRNA genes, and four are rRNA genes. Sixteen genes contain one intron and two genes have two introns. The average A-T content of the plastome is 62.1%. The M. indica plastome has approximately 15 kb inversion between trnT-UGU and trnT-GGU. We identify a palindromic repeat of 18 bp (ATTCTTTTTTTTTTTTTT/AAAAAAAAAAAAAAGAAT) near the inversion breakpoints of M. indica plastome. Phylogenetic analysis revealed that M. indica is a sister group of Rhus chinensis with 100% bootstrap support. Anacardiaceae clade is a sister group of Boswellia sacra (Burseraceae) with 100% bootstrap support.",

keywords = "Anacardiaceae, Mangifera indica, Plastome, large inversion, mango",

author = "Sangjin Jo and Kim, {Hoe Won} and Kim, {Young Kee} and Sohn, {Jung Yeon} and Cheon, {Se Hwan} and Kim, {Ki Joong}",

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AU - Sohn, Jung Yeon

AU - Cheon, Se Hwan

AU - Kim, Ki Joong

N1 - Funding Information: This work was supported by the National Research Foundation of Korea (NRF) under the Grant Nos. NRF-2015M3A9B8030588 and NRF-2015M3A9B8047398 to KJK. Publisher Copyright: © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

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N2 - In this study, we determined the complete plastome sequence of Mangifera indica L. (Anacardiaceae) (NCBI acc. no. KX871231). The complete plastome is 157,780 bp in length, and consists of a large single copy of 86,673 bp and a small single copy of 18,349 bp, separated by two inverted repeats of 25,792 bp. The plastome contains 112 genes, of which 78 are protein-coding genes, 30 are tRNA genes, and four are rRNA genes. Sixteen genes contain one intron and two genes have two introns. The average A-T content of the plastome is 62.1%. The M. indica plastome has approximately 15 kb inversion between trnT-UGU and trnT-GGU. We identify a palindromic repeat of 18 bp (ATTCTTTTTTTTTTTTTT/AAAAAAAAAAAAAAGAAT) near the inversion breakpoints of M. indica plastome. Phylogenetic analysis revealed that M. indica is a sister group of Rhus chinensis with 100% bootstrap support. Anacardiaceae clade is a sister group of Boswellia sacra (Burseraceae) with 100% bootstrap support.

AB - In this study, we determined the complete plastome sequence of Mangifera indica L. (Anacardiaceae) (NCBI acc. no. KX871231). The complete plastome is 157,780 bp in length, and consists of a large single copy of 86,673 bp and a small single copy of 18,349 bp, separated by two inverted repeats of 25,792 bp. The plastome contains 112 genes, of which 78 are protein-coding genes, 30 are tRNA genes, and four are rRNA genes. Sixteen genes contain one intron and two genes have two introns. The average A-T content of the plastome is 62.1%. The M. indica plastome has approximately 15 kb inversion between trnT-UGU and trnT-GGU. We identify a palindromic repeat of 18 bp (ATTCTTTTTTTTTTTTTT/AAAAAAAAAAAAAAGAAT) near the inversion breakpoints of M. indica plastome. Phylogenetic analysis revealed that M. indica is a sister group of Rhus chinensis with 100% bootstrap support. Anacardiaceae clade is a sister group of Boswellia sacra (Burseraceae) with 100% bootstrap support.

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The complete plastome sequences of Mangifera indica L. (Anacardiaceae)

Abstract

Keywords

ASJC Scopus subject areas

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